Gene detail information of Glyur003799s00036833 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G70210.1 | 8.00E-44 | CYCLIN D1;1 |
| NR | XP_003555300.1 | 6.28E-155 | PREDICTED: cyclin-D4-1-like isoform X1 [Glycine max] |
| Swissprot | tr|P42751|CCD11_ARATH | 6.00E-61 | Cyclin-D1-1 |
| trEMBL | tr|I1NG37|I1NG37_SOYBN | 2.00E-155 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G27180.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03799 | 14051 | 15799 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003799s00036833.1 | PF00134.18 | Cyclin_N | 47 | 173 | 6.50E-27 |
| Glyur003799s00036833.1 | PF02984.14 | Cyclin_C | 176 | 275 | 1.80E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.095 |
| SRR1783600 | control | 18.177 |
| SRR1783602 | moderate drought stress | 6.036 |
| SRR1811619 | moderate drought stress | 6.071 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.553 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.129 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.242 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.113 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.111 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.281 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.075 |
| SRR2868004 | Drought Stress (root) | 8.272 |
| SRR2967015 | Control (root) | 5.795 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.202 |
| SRR9715740 | Leaf | 0.051 |
| SRR9715741 | Leaf | 0.470 |
| SRR9715739 | Root | 12.933 |
| SRR9715742 | Root | 14.915 |
| SRR9715743 | Root | 14.812 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.432 |
| SRR8749028 | MeJA induced 9h | 0.311 |
| SRR8749029 | MeJA induced 9h | 0.437 |
| SRR8749030 | Uninduced | 0.152 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.127 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 45.915 |
| SRR8400027 | Control - Root | 34.287 |