Gene detail

Gene detail information of Glyur003799s00036831

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G49960.1	0	Xanthine/uracil permease family protein
NR	XP_003555298.1	0	PREDICTED: nucleobase-ascorbate transporter 4-like [Glycine max]
COG	YP_003736672.1	1.00E-76	xanthine/uracil permease family protein [Halalkalicoccus jeotgali B3]
Swissprot	tr\|P93039\|NAT4_ARATH	0	Nucleobase-ascorbate transporter 4
trEMBL	tr\|I1NG36\|I1NG36_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA20G27170.1}

Sequence

Transcript Sequence

>Glyur003799s00036831.1
CTGGTCTCTGTGTTGAAAAGTGCTTCACGTCCATTTGGAAAGGCGTTGCAATTGCAAAGCACACCTTGCTAGAGACAGAGTCACAACGTCGCTGCCTACCCTTCCTCACCGATCTCACCCATCATTTCCATAATCCTCTCTCTCATCATTTCGTATCAGAGTGTCAGAAAAAGTACAACACCCCTGCTTTCTTTATTCTTTTCGCACTATAAGAAACACTAGCAGAGAAAACAGAGTGAACAAACAAGATAGAGTGTGAGGGAGAGAAAAAATGGCGGCAGGAGGAGGAGGAGGAAAGGTTGATGAGTTCCAACCTCATCCTGTGAAGGACCAACTTCCTGGTGTTGATTACTGTGTTACCAGCTCACCATCTTGGCCTGAAGGAATTCTCCTTGGATTTCAGCACTACTTGGTTATGCTGGGGACCATCGTCATTGTTTCCACCATACTTGTCCCTTTGATGGGTGGTGGCAATGTAGAGAAGGCTGAAATGATACAGACACTGCTTTTTGTTGCGGGCATAAACACACTGTTACAGACATGGTTTGGAACACGGCTTCCGGTGGTTGTTGGGGCATCATATGCTTTCCTCATTCCTGCTATTTCTGTTGCTCTTTCTACCAGGATGAGTATAGTTCTAGATCCACATCAGAGATTCAAGCAATCCTTGAGGGCCATACAAGGGGCCATGATTGTTGCATCATTAGTTCAAATCATTATTGGTTTTTTNGGATTTTGGAGGATTTTCGCCAGGTTTCTTAGCCCTCTCAGTGCGGTTCCCCTTGTCACTCTGACTGGCCTAGGGCTCTTTGCAATAGGGTTTCCAAGGTTGGCAGATTGTGTTGAAATTGGTCTCCCTACATTGGTTACTCTGGTCATCCTGTCCCAGTACATTCCCCAAAAGATGAAATCAAGAGGAGTTGATCGATTTGCAATCATAGTCTCAATTGGAATTGTTTGGGCATTTGCTGAGATTTTGACTGCAGTAGGTGCATATAATAAAAGATCACCAAGAACTCAGTTCAGTTGCCGTACTGATCGATCTGGGTTAATTAGTGCTGCTCCTTGGATAAGAGTTCCATATCCATTTCAATGGGGAAGCCCTTCTTTCAATACCGGTGATGTTTTTGCAATGGTTGCCGCTTCTTTTGTTGCAATTGTAGAGTCAACTGGGACATTCATTGCGGCATCGAGATTTGGCAGTGCAACCCCTATTCCNCCTTCTGTTCTTAGCCGTGGTGTTGGCTGGCTGGGTATAGGTACTCTTCTGAATGGATTTTTTGGAACAGGAACTGGACCCACTGCATCAGTTGAAAATGCAGGACTGTTGGGTTTAACACGAGTTGGAAGCCGAAGAGTCATTCAAATATCAACTGGATTCATGTTTTTCTTCGCTTTATTAGGTAAATTTGGAGCCGTTCTAGCTTCAATACCATTGCCAATTATAGCAGCTTTGTACTGCGTTCTCTTTGCCTATGTAGCATCAGCTGGNCTTGGCTTTCTTCAGTTCTGCAATCTAAACAGCTACAGGTCAATGTTCATCATCGGTTTTTCTCTCTTCATGGGTTTATCTGTTCCACAATATTTCAACGAGTATCTGTTGCTATCCGGGCATGGCCCTGTTCATACTGGCTCCATTGCATTCAACNATATAGTGCAAGTGATTTTCTCATCCCCGGCAACTGTGGCAATTATAGTTGCTTACTTCTTGGATTTCACTATGAGTCGTGGGCATAGCTCGACTCGCCGTGACAGTGGGAGACACTGGTGGGAAAAGTTCAGGAACTTCAATCAGGATACTAGAAGTGAAGAGTTCTACTNACTNCCTTTTANACTTAACAGATTTTTCCCCTCATTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03799	5421	10178	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003799s00036831.1	PF00860.15	Xan_ur_permease	39	439	3.00E-64

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.871
SRR1783600	control	18.065
SRR1783602	moderate drought stress	15.711
SRR1811619	moderate drought stress	15.775

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.346
DRR006520	Root Summer glycyrrhizin high producing strain	0.347
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	3.961
DRR006524	Root Summer glycyrrhizin low producing strain	3.853
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.187
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.199

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	59.338
SRR2868004	Drought Stress (root)	28.506
SRR2967015	Control (root)	26.931

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.254
SRR9715740	Leaf	0.329
SRR9715741	Leaf	0.799
SRR9715739	Root	19.074
SRR9715742	Root	9.580
SRR9715743	Root	13.038

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.222
SRR8749028	MeJA induced 9h	0.061
SRR8749029	MeJA induced 9h	0.388
SRR8749030	Uninduced	0.161
SRR8749031	Uninduced	0.622
SRR8749032	Uninduced	0.243

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	122.012
SRR8400027	Control - Root	121.320