Gene detail information of Glyur003797s00045058 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G09380.1 | 8.00E-48 | RNA polymerase III RPC4 |
| NR | XP_004495578.1 | 7.45E-117 | PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like [Cicer arietinum] |
| trEMBL | tr|I1MSB8|I1MSB8_SOYBN | 1.00E-115 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G05820.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03797 | 13428 | 15113 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003797s00045058.1 | PF05132.9 | RNA_pol_Rpc4 | 139 | 252 | 5.10E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.521 |
| SRR1783600 | control | 13.638 |
| SRR1783602 | moderate drought stress | 12.235 |
| SRR1811619 | moderate drought stress | 12.328 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.204 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.371 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.531 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.909 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.776 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.697 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.020 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.881 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 27.539 |
| SRR2868004 | Drought Stress (root) | 29.672 |
| SRR2967015 | Control (root) | 26.615 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 19.795 |
| SRR9715740 | Leaf | 17.254 |
| SRR9715741 | Leaf | 19.980 |
| SRR9715739 | Root | 4.790 |
| SRR9715742 | Root | 15.115 |
| SRR9715743 | Root | 13.343 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 44.806 |
| SRR8749028 | MeJA induced 9h | 40.412 |
| SRR8749029 | MeJA induced 9h | 34.816 |
| SRR8749030 | Uninduced | 42.157 |
| SRR8749031 | Uninduced | 21.673 |
| SRR8749032 | Uninduced | 30.559 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.326 |
| SRR8400027 | Control - Root | 23.766 |