Gene detail

Gene detail information of Glyur003792s00046197.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G77760.1	0	nitrate reductase 1
NR	P39869.1	0	RecName: Full=Nitrate reductase [NADH]; Short=NR [Lotus japonicus]
COG	YP_001545630.1	4.00E-36	sulfite oxidase [Herpetosiphon aurantiacus DSM 785]
Swissprot	tr\|P39869\|NIA_LOTJA	0	Nitrate reductase [NADH]
trEMBL	tr\|I1LW34\|I1LW34_SOYBN	0	Nitrate reductase {ECO:0000256\|PIRNR:PIRNR000233}

Sequence

Transcript Sequence

>Glyur003792s00046197.1
ATAAAACCCATCAAACCCCTTCATCCGATGACCAGATCCCCTTTCTCAAGTATCAGAAAGCGACAGAGAGAGAAAGGAAAGAGGAGAGCCTTTAATTTTATTTTTCTTTCCCTCCTCCGTCCCTCTCAAAATGGCGGCTTCGGTTGACAATCGTCAGTTCGGTGGCCTAAACGGCGTCGTTCGGAGCACCTTCAACCCAAGCGGTAACTGCATCCACGACCTGAAACCGGGTTTCCCGGTGGACTTAGATTCTTACGTCAGCAGCGACGATGACGAAAACGACGACGCTTTAAAGGAGCTCGTACGCAAGGCAAACGCGGAGGTCGAGCCCTCTGTACTAGACCCACGCGATGAGGGAATCGCTGACAACTGGGTCCCACGCAACGCCTCCATGGTCCGTCTCACAGGGAAACACCCCTTCAACTCGGAGCCNCCACTCCCACGCCTCATGCACCACGGTTTCATCACCCCGGTCCCACTCCACTATGTCCGTAACCATGGTTCAGTCCCCAAGGCTCGATGGGAGGACTGGACCGTCGAGGTGACCGGTCTAGTAAAACAACCAACCCGGTTCACCATGGACCGGCTCGTCCGCGAGTTCCCGAGCCGCGAGTTTCCCGTGACACTAGTCTGCGCCGGTAACCGCCGAAAGGAGCAGAACATGGTGAAGCAGAGCGTGGGATTCAACTGGGGAGCCGCAGCGGTTTCAACCTCCGTGTGGCGCGGGGTTCTGCTTCGCCAGGTGCTAAAACGCTGTGGGATCCANGCGCGCTCAAAAGGCGCGCTCCACGTGTCCTTCTACGGCGCAGAGGATTTACCCGGTGGTGGTGGTGGGTCCAAGTATGGAACTAGCATCAAGAGGGAGATTGCGATGGACGATTCGCGTGATGTTATACTCGCTTACATGCAGAATGGTGAGCCCTTGGCGCCGGATCACGGGTTCCCCGTGCGCGTTATCATTCCCGGTTTCATTGGTGGACGCATGGTGAAATGGCTCAAGCGTATCGTTGTGACTGCGGATGAGTGTGATGGTCATTACCATTACAAGGACAATAGAGTGCTTCCTTCCCACGTTGATGCGGAACTTGCCAATGCAGAAGCTTGGTGGTACAAGCCGGAGTATATTATCAACGAGCTGAACATAAATTCGGTGATTACGACGCCGTGTCACGACGAGATCTTGCCCATTAATTCATGGACTACGCAGAGGCCTTATATACTGAGAGGTTACGCATATTCCGGTGAGGTGAAAACAAACGTGTGCAGGCCCCACCAGGGTGAAATCGGCATAGTATTCGAACACCCAACCCAACCAGGGAACCAAACCGGTGGTTGGATGGCGAAAGAGAGACACCTATCACAAGAGTCGAACCACCCAACCCTGAAGAAGAGTGTCTCCACACCATTCATGAACACCGCCTCAAAGATGTACTCCCTCTCCGAGGTGAAGAAGCACAGCACACGTGACTCCGCGTGGATCATCGTCCACGGCCACGTCTACGACTGCACCCGCTTCCTCAACGACCACCCCGGCGGCGCCGATAGCATCCTCATCAACGCCGGCACCGACTGCACCGAGGAGTTCGAGGCCATCCACTCCGACAAAGCCAAGAAAATGCTCGAAGAATACCGCATCGGCGAGCTCGTAACCACCGGCTACACCTCCGACTCATCCTCCCCAAACAACTCCATCCATGGAAATTCCGAATTTACCCATCTCGCCCCCATCAAGGAAATCACCACCCTTACAACACCACCGCCACGTGGCGTTGCTCTCAACAACCCACGCGAGAAAATCCCATGCAGGCTCGTTTCCAAAANCTCACTCTCCCACGACGTGAGGCTCTTCCGTTTCGCATTGCCCTTCGAGGAGCAGCTCTTGGGTTTACCCGTGGGGAAGCACATTTTCCTATGTGCAACCATTGATGGGAAGCTATGCATGCGAGCTTATACACCAACGAGTAGCGTCGATGAGATTGGTTATTTCGAGTTAGTAATCAAGGTTTACTTCAAAGGCGTGCACCCGAAGTTCCCCCACGGTGGGGTCATGTCTCAGTATTTGGACTCACTCCCAATTGGGTCCGTTTTGGACGTGAAAGGCCCATTGGGCCACATAGAGTACACCGGGAAAGGGAACTTTATGGTTCACGGGAAGCACCGGTTCGCGAAGAGGTTGGCTTTGTTGGCCGGTGGGACCGGGATCACGCCGGTTTATCAGGTGGCCAAAGCGGTTTTGAAGGACCCTGAGGACTGTACCGAATTGTATGTGGTGTATGCGAACCGGACGGAGGATGATATATTGTTGAGAGAGGAGATGGNTGAGTGGGCGAGGAAGTACGGTGATCGGTTTAAGGTGTGGTACGTGGTGGAAAACGCGAGGGATGGGTGGGGATACAGTGTGGGGTTCATCACGGAGAGTATCATGAGGGAGCATGTTCCTGAGGCTGCAGAGGATGTGTTGGCTTTGGCGTGTGGGCCACCACCCATGATTCAGTTTGCTGTGCAGCCTCATTTGGAAAAAATGGGGTATGACATCAAGAACGATTTGCTTGTGTTTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03792	10505	15093	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10534	NR	EC:1.7.1.1 1.7.1.2 1.7.1.3	Nitrogen metabolism	map00910

Gene Ontology

biological_process

GO:0042128 nitrate assimilation

GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0020037 heme binding

GO:0030151 molybdenum ion binding

GO:0043546 molybdopterin cofactor binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003792s00046197.1	PF00174.14	Oxidored_molyb	121	304	5.30E-53
Glyur003792s00046197.1	PF03404.11	Mo-co_dimer	330	373	1.30E-06
Glyur003792s00046197.1	PF00173.23	Cyt-b5	434	505	1.80E-28
Glyur003792s00046197.1	PF00970.19	FAD_binding_6	557	664	4.30E-34
Glyur003792s00046197.1	PF00175.16	NAD_binding_1	684	791	2.50E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.749
SRR1783600	control	14.676
SRR1783602	moderate drought stress	109.867
SRR1811619	moderate drought stress	109.187

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	35.564
DRR006520	Root Summer glycyrrhizin high producing strain	34.413
DRR006521	Root Winter glycyrrhizin high producing strain	120.293
DRR006522	Root Winter glycyrrhizin high producing strain	116.617
DRR006523	Root Summer glycyrrhizin low producing strain	89.203
DRR006524	Root Summer glycyrrhizin low producing strain	89.695
DRR006525	Leaf Summer glycyrrhizin high producing strain	374.100
DRR006526	Leaf Summer glycyrrhizin high producing strain	367.627

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	48.895
SRR2868004	Drought Stress (root)	38.867
SRR2967015	Control (root)	38.007

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	134.630
SRR9715740	Leaf	193.874
SRR9715741	Leaf	89.939
SRR9715739	Root	46.515
SRR9715742	Root	28.820
SRR9715743	Root	29.880

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	416.172
SRR8749028	MeJA induced 9h	674.009
SRR8749029	MeJA induced 9h	625.010
SRR8749030	Uninduced	319.889
SRR8749031	Uninduced	411.510
SRR8749032	Uninduced	559.893

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.463
SRR8400027	Control - Root	51.731