Gene detail information of Glyur003788s00047646 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G31980.1 | 4.00E-59 | |
| NR | XP_003548088.2 | 4.09E-130 | PREDICTED: UPF0481 protein At3g47200-like [Glycine max] |
| Swissprot | tr|Q9SD53|Y3720_ARATH | 5.00E-38 | UPF0481 protein At3g47200 |
| trEMBL | tr|I1MP20|I1MP20_SOYBN | 5.00E-130 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G27690.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03788 | 14983 | 16323 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003788s00047646.1 | PF03140.10 | DUF247 | 48 | 432 | 2.70E-95 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.894 |
| SRR1783600 | control | 0.817 |
| SRR1783602 | moderate drought stress | 1.136 |
| SRR1811619 | moderate drought stress | 1.105 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.040 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.106 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.069 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.989 |
| SRR2868004 | Drought Stress (root) | 18.054 |
| SRR2967015 | Control (root) | 12.740 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.338 |
| SRR9715742 | Root | 0.091 |
| SRR9715743 | Root | 0.046 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.045 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.114 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.528 |
| SRR8400027 | Control - Root | 0.650 |