Gene detail

Gene detail information of Glyur003785s00046631

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G44360.1	1.00E-101	FAD-binding Berberine family protein
NR	XP_004504926.1	0	PREDICTED: cannabidiolic acid synthase-like 2-like [Cicer arietinum]
COG	YP_007422116.1	4.00E-25	FAD-dependent oxidase [Bacillus thuringiensis serovar kurstaki str. HD73]
Swissprot	tr\|Q33DQ2\|THCAI_CANSA	4.00E-114	Inactive tetrahydrocannabinolic acid synthase (Precursor)
trEMBL	tr\|A0A072UPK7\|A0A072UPK7_MEDTR	0	Reticuline oxidase-like protein {ECO:0000313\|EMBL:KEH31301.1}

Sequence

Transcript Sequence

>Glyur003785s00046631.1
CCAGAAAAGCAGAACCCTTGGCTTCCCTGCAGGATTTGCCCCACCGTAGGTGTTGGTGGACAAATCAGCGGCGGTGGCTATGGATCCTTGTTGCGCAAATACGGTCTTGCCGCAGATCATGTAATTGATGCCCGCATAATTGATGTGAAGGGTAGGCTTCTTGACAGTGAAGCAATGGGTGAGGATCTATTTTGGGCCATTAGAGGAGGTGGAGGGGCAAGCTTTGGAGTCATCACAGCGTGGAAGATAAAATTGGTTCCTGTTCCACCAACTGTGACAGTGTTCAGGGTTTCCAAGACATTGGAACAAAATGCAACCAAGCTTATTCACAAGTGGCAGCATGTGGCAAATAAACTTGATGGGGACCTAATCATTACGATCAAATTGACGAGGGTAAATTCAAGTCAAACAGGGAAGCTAACAGTACAAGCCACATTTGAATGTGTGTTTCTTGGAGGCGTGGATAGGCTCCTTCCTTTGNTGCAAGAGGTGTTCCCAGAGCTGGGATTGATTAGAGAAGACTGTACTGAGATGAGTTGGGTAGAGTCAGTCCTCTACATTTATGGATTTACAAGTGGTCAACCTCTTGAAGTTTTGCTCAACAGAACTAGTCAAGACGATGTGTTGTTTTTCAAAGGGAAATCTGATTATGTAAGAGATCCTATTCCGGACTCTGGGTTAGAAGGGTTATGGCCAATGTTTTATGAAGATGAGGCCCAACATGCATTGCTGACGCTCATACCTTATGGAGGCAAAATGGATGAGATTCCGGAGTCTAAAATTCCATTCCCGCACAGAGCTGGAAACATTTACAGTATTCAGCACTGGCTTTATTGGCAAGAGGAAGGGGATGAGGTTGCACAAAGGCACTTTAACTGGATTAGAAGACTGTACAGTTATATGGAACCTTTTGTTTCAAAGTCTCCNAGAGCTGCATATGTCAATGAAAGAGACCTTGACATTGGGGTGAATAATATTAATGGCTACACAAGCTATGAGCAAGCCAGCATTTGGGGTCTCAAGTATTTCAAGAACAACTTCAATAGATTGGCTAAAGTGAAGACCAGGGTTGATCCTNTAAACTTCTTCAGAAATGAACAGAGCATACCTTCTCTTATGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03785	110	1231	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0008762 UDP-N-acetylmuramate dehydrogenase activity

GO:0016491 oxidoreductase activity

GO:0016614 oxidoreductase activity, acting on CH-OH group of donors

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003785s00046631.1	PF01565.18	FAD_binding_4	5	55	1.90E-06
Glyur003785s00046631.1	PF08031.7	BBE	312	370	2.00E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	80.565
SRR1783600	control	83.163
SRR1783602	moderate drought stress	19.462
SRR1811619	moderate drought stress	20.783

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.207
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.086

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.225
SRR2868004	Drought Stress (root)	14.033
SRR2967015	Control (root)	7.159

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.864
SRR9715740	Leaf	1.699
SRR9715741	Leaf	1.967
SRR9715739	Root	203.349
SRR9715742	Root	99.197
SRR9715743	Root	122.876

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.254
SRR8749028	MeJA induced 9h	44.211
SRR8749029	MeJA induced 9h	25.284
SRR8749030	Uninduced	2.868
SRR8749031	Uninduced	15.387
SRR8749032	Uninduced	8.767

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	439.660
SRR8400027	Control - Root	342.793