Gene detail

Gene detail information of Glyur003779s00040561

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G04490.1	5.00E-46	vitamin E pathway gene 5
NR	XP_004496158.1	1.47E-91	PREDICTED: probable phytol kinase 1, chloroplastic-like [Cicer arietinum]
COG	YP_001518587.1	6.00E-25	phosphatidate cytidylyltransferase [Acaryochloris marina MBIC11017]
Swissprot	tr\|Q2N2K1\|PHYK1_SOYBN	5.00E-89	Probable phytol kinase 1, chloroplastic (Precursor)
trEMBL	tr\|V7BFH9\|V7BFH9_PHAVU	1.00E-89	Uncharacterized protein {ECO:0000313\|EMBL:ESW16295.1}

Sequence

Transcript Sequence

>Glyur003779s00040561.1
TAGGTTACCATTTTTTCAGGTGAAACAAATCATATTTACTTAAGCACAAGATAAAAGAGCTTATCCTAAAATAAATATATAAGGGGATTTTTTGCTTGGGTGAAGTCTAGTTAGTTTCTGGGTCATGACACTCTTATCCTCTCAGTCTCACCTTTTTGCATTCTCCGCCGTGCACNGCCGTGCACCGGCGACCACCACCACCCACCTTCCTTGGAACAAACCCACTTTCCGGTTTTTGTGTTCTCCTCCTGTAGTGCCAGGTGTCCGTTTGGGTGAAAGGGTAGTGACAAGGTTCGTTGTCCCTGCAAATGCCCAAGATTTGATCCACAATGCTGGAGCTACCGTTGGTGTTCTTGGTGGCGCTTATGCCCTCGTCTTTGCTTTTGACGATCTCACCAAAAGGAACATCCTTAACCAGATTTTTGAAAATTGATGGGCACTTGGCAGGGTCTGAGCAGAAAACTGGTCCATATACTGTCTGGCTTGCTTTTTCTGGTTTCTTGGCCAATTTTCAGGATAGCAACTCCCCNAAGGCTCGGTACTTTGCTGCTTTTGTTCCTCTTGTGAATTTCCTGAGGCTCTTGTTCAATGGTCTCTCCTTGGCTTCTGATCAAGGACTCATCAAATCCGTGACTAGAAAAGGAGATCCACAGGAATTGCTAAGAGGTCCCCTGTATTATGTTGCAATACTGATGTTATGTGTAGCTGATATCATTGGGAGAAGATATGGGTCCATGAAGATTCCTTACAACCAAAAAAAGAGTTGGGCTGGCAGCATATCCATGCTTGTATTTGGATTCTTGGTTTCAATTGGGATGCTCTACTACTATTCGGCTCTAGGTCATGTGCAGTTGGATTGGAGAAGCACTGTGCCCAGTGTTGCTTTTGTTTCTTTTGTGGCAACAGTGGTGGAGTCCCTTCCNATCACTGAGGTGGTAGATGACAACATATCTGTTCCACTAGCAACCATGGCAGTGGCATTTTTCACCTTACATNACAATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03779	17573	19658	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003779s00040561.1	PF01148.15	CTP_transf_1	124	216	1.80E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.090
SRR1783600	control	2.029
SRR1783602	moderate drought stress	2.069
SRR1811619	moderate drought stress	2.125

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.398
DRR006520	Root Summer glycyrrhizin high producing strain	1.485
DRR006521	Root Winter glycyrrhizin high producing strain	0.237
DRR006522	Root Winter glycyrrhizin high producing strain	0.321
DRR006523	Root Summer glycyrrhizin low producing strain	1.144
DRR006524	Root Summer glycyrrhizin low producing strain	1.105
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.366
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.089

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.070
SRR2868004	Drought Stress (root)	1.864
SRR2967015	Control (root)	2.905

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.607
SRR9715740	Leaf	11.147
SRR9715741	Leaf	5.993
SRR9715739	Root	0.908
SRR9715742	Root	1.507
SRR9715743	Root	1.381

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.037
SRR8749028	MeJA induced 9h	0.112
SRR8749029	MeJA induced 9h	0.243
SRR8749030	Uninduced	0.170
SRR8749031	Uninduced	0.087
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.783
SRR8400027	Control - Root	5.799