Gene detail

Gene detail information of Glyur003777s00045417

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G66760.2	1.00E-113	MATE efflux family protein
NR	KHN13925.1	0	MATE efflux family protein 8 [Glycine soja]
COG	YP_006846285.1	6.00E-12	MatE family transporter [Amphibacillus xylanus NBRC 15112]
Swissprot	tr\|Q9SIA1\|MATE8_ARATH	4.00E-125	MATE efflux family protein 8
trEMBL	tr\|I1N5M0\|I1N5M0_SOYBN	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}

Sequence

Transcript Sequence

>Glyur003777s00045417.1
ATGGGTAAGAAGGAGAAATCAGTAGTAGTACCACTGCTAACAAAGAGTGGAGAAAGTGATGATGGGTTTGCACCATTGAATTTGGAGGGTGCATTTTGGCCAGAGCTTAAAAGGGTAGGATCCATGGCAGCTCCAATGGTGGTTGTGACTGTGTCTCAGTACCTTTTGCAAGTTGTGTCACTCATGATGGTTGGACATCTAGGCATACTAGTCACCTTCTCTGGTGTTGCCATTGCCACCTCTTTTGCTGAAGTTACCGGCTTCAGTGTCCTTTTGGGAATGGCNGGTGCATTGGAAACTNTATGTGGCCAAACCTATGGTGCTGAGGAATTCAGAAAGATNGGGAACTACACNTGCTGTGCAATTGTCACCCTGATTTTGGTTTGTCTCCCCATATCTCTCCTGTGGATATTCATGGATAAATTACTCTTGCTGTTTGGTCAAGACCCGGGTATTTCTCATGCAACTCGCGGTTACTGCATATGCTTGATCCCTTCACTCTATGGCTATGCTGTTCTCCAATCCTTGATCCGCTACTTCCAGACTCAGAGTATGATCTTCCCCATGGTTTTCAGCTCAATTGCAATTCTGTGTTTTCATGTTCCTATTTGTTGGGGTCTGGTGTTTAAATTTGGACTTGGACATGTTGGAGCAGCATTTGCCATTGGGATTTCATATTGGTTGAATGTCATTTGGCTTGGAATTTATATGAAGTGTTCCCCATCATGTGAGAAAACAAAGGTTGTGTTTTCTAGCAATGCTTTACTGAACATTGCTGAGTTCTGCCAATTTGCTATCCCTTCTGGACTAATGTTTTGCACTCGGGTTTCGAATGAATTAGGAGCAGGGAATCCAAGNGCAGCTCAAGGCGTTGTTCGTGTCGTTGTGATTCTTGGAATCGCCGAGGCGGTTATTGTCAGCACTTTCTTTGTTTGTTGTAGGCATATATTAGGATATGCTTATAGCAATGACAAGCAAGTTGTAGATTATGTTACAGAAATGGTTCCCCTTCTTTGTGTTTCTGTTAGTGCAGATAGTCTAATAGGAGCACTTTCTGGGATGGTAAGAGGTGGAGGGTTTCAGAAAATAGGGGCTTGTGTGAACCTTGGAGCCTATTATCTTGTAGGTGCTCCTATAGCATTCTTATTGGGTTTTGGCCTAAAACTCAATGCCAAGGGACTTTGGATGGGAACTCTAACAGGATCTATTCTAAGTGCAATTATACTGGCTGTTGTAACAGTGTTAATAGATTGGCAGAAAGAGAATGTTCCTCTTCCANGTCGCTTTGGTGTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03777	16104	20122	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006855 drug transmembrane transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015238 drug transmembrane transporter activity

GO:0015297 antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003777s00045417.1	PF01554.13	MatE	45	205	2.90E-23
Glyur003777s00045417.1	PF01554.13	MatE	255	382	1.10E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.532
SRR1783600	control	0.493
SRR1783602	moderate drought stress	0.522
SRR1811619	moderate drought stress	0.537

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.641
DRR006520	Root Summer glycyrrhizin high producing strain	0.566
DRR006521	Root Winter glycyrrhizin high producing strain	1.621
DRR006522	Root Winter glycyrrhizin high producing strain	1.348
DRR006523	Root Summer glycyrrhizin low producing strain	1.378
DRR006524	Root Summer glycyrrhizin low producing strain	1.313
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.867
SRR2868004	Drought Stress (root)	4.966
SRR2967015	Control (root)	4.692

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.048
SRR9715740	Leaf	0.049
SRR9715741	Leaf	0.000
SRR9715739	Root	0.218
SRR9715742	Root	0.399
SRR9715743	Root	0.725

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.852
SRR8749028	MeJA induced 9h	90.547
SRR8749029	MeJA induced 9h	51.149
SRR8749030	Uninduced	125.596
SRR8749031	Uninduced	88.822
SRR8749032	Uninduced	90.200

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.745
SRR8400027	Control - Root	1.330