Gene detail

Gene detail information of Glyur003762s00039162

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G45460.2	SMAD/FHA domain-containing protein
NR	XP_004492647.1	PREDICTED: WEB family protein At5g16730, chloroplastic-like [Cicer arietinum]
trEMBL	tr\|G7L0A8\|G7L0A8_MEDTR	Smad/FHA domain protein {ECO:0000313\|EMBL:AES79952.2}

Sequence

Transcript Sequence

>Glyur003762s00039162.1
CAATTTCTTCACTCCACACAGTTAGTTCACTTCACAGTTCACACTTCACACCCGAAAATCAGGTAACTAGGGTTTCAAAATCCCCGCCCCCGCCAATTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACTGTGACTGCAATGGCGATGGAGGACGAGAAATCCGAAACCCCGAGACCCAACAACACCGTTGCTGTTGCTGTTGGTGGCAGCGAGGATTCTCCGAAGAAGCAAGTTGGTGAGAATTCTCCGAAGAAGCAAGCATCGACGCCGAGTATGAGCGCGAGAGATCGCATTGTGTCTGTTGCCTCCAACTTGGCTTCACAACCTCTCCACAACTCCGATCCTGACGTTTGGGGTGTCCTCACTGCCATCTCCAACTATGCCCGCAAAAGACACCAGGGAATTAATATTTTATTAACTGCTGATGAGCACTGCATTGGGCGATTGGTAGAGGATGTGCGTTTCCAGATTGATTCGAATTCCGTTAGTGCAAATCATTGCAGAATATACAGGACGAGGATTACTANCGAAAATATGGAGAATACAACATCGATATTCCTGAAAGATACAAGCACAAATGGAACTTACCTTAACTGGGAGAAGTTGAAAAAGAATGGTGCTGCTGTCAAAGTCTGCCATGGTGATATTATATCATTTGCTGCTCCTCCTCAGCATGAAATCGCATTTGCTTTTGTGTATCGAGAGGTGCAAGTGTCCACCTCTATNCCAGCCAATGCAGTTGCTAAACGAAAAGCAGAGGATTTTGTTTCNGAAAACAAGAGATTGAAAGGTTTAGGCATTGGCGCTCCTGAGGGTCCTATATCTCTTGATGATTTTAGAAGCCTTCAAAGATCCAACTCGGAATTGAGAAAGCAATTGGAGAATCAGGTGGTTATAATTGATACTTTGCGTAGTGACAACCGTGCAGCTGTTGAACGTCATGAAACTGAGTTAAAATCTGCCAAAGAGTCTGTCGCAAAATGTTACCTTGATCAATTAAAAGAATTACAGCAAATGGTGGACCTCAAACAAAAGGAACTAGGGGATGTCAACAGAGCATTTGCTGAACAAAAACATGCCCTGGAAGACCTTAATGAAAGGCTTNGTGCTTCTATGCAGTCATGTGCTGAAGCAAATGCTTTAATAAATAGTCAAAAGGTAAATATAGCTGAACTCAAGGAACAAGTAGATGAAGAGAGGACTCAGCGAAAAGAAGAGCGAGAAAAGGCTGCAGCTGATCTAAAAGCTGCCGTTCATAGAGGCCAGTCTGAGGCTCAAGAGGAAATAAAACGACTCTCAGATGCTGCCTTAAGAAGAGAGACAGAGCTACAAGAAGCGATAAATAAGCTGAAGGAGTCAGAGAAAGAAACGTGTTTGCTGGTTGAAACCTTGAGGTCCAAGCTGGAGGATACTAGGCAAAAGTTGGTTGTCTCTGATAATAAGGTTCGCCAGTTGGAAACCCAAGTACATCAAGAGAAGCTGACCAATGAAAATGGAATGAAGAAAATAGAAGAACTTGAACAGGAAACACGAAGATTAAGGAAAGAGCTTGAGAGTGAAAAGGAGGATACTAGGCAAAAGTTGGTTGTCTCTGATAATAAGGTTCGCCAGTTGGAAACCCAAGTACATCAAGAGAAGCTGACCAATGAAAATGGAATGAAGAAAATAGAAGAACTTGAACAGGAAACAAGAAGATTAAGGAAAGAGCTTGAGAGTGAAAAGTTAGCTCGTGAAGAAGCATGGGCTAAAGTTTCAGTTCTTGAGCTTGAGATAAATGCTGCAATGCGAGACCTTGATTTTGAGAAGCGGAGGTTAAAAGGTGCCAGGGAAAGACTTATGCTTCGGGAAACACAGCTGCGATCATTTTACTCCACTACTGAGGAGATACAAGTACTGTTTGCTAAGCAACAGGAACAATTGAAGGCTATGCAGAGAACGCTAGAAGATGAAGAGAATTATGAGAATACTTCTGTAGACATGGATGGAGTCATAGGTGGGACCTCAGGAAGAGAAAAAGATGTTGCAGAATACCACAGCAACAGTGCTGCCAAGGCAGGATCAACTACTTCTGCACAGAAACTCAAGAGAGATCAAATTGAAACATCGAGCAATGAAGCAAGTGTCACTGAGAAGCATGACTGTGATATAAGGAGTGAAGAATGCCAAAATACACAAGAGGCAGAATTCACCAGTGCTGATCATGACCATGGTGTCAGAGATGGCTTTGGCTCTGATGTTGATGGTGTTGGCACAGCAGTTATGATGGAAGGAGATGATGTTGGCACCGAAAGAGTTCTTGAAACTGAAAGTCCTGCAAATTATGGTGAACGGACTTTTGATTTGAACAAGGGTGGTCCTATAGAAGGGGACACCATGCAGTTCGACGATGATATCCATGTACAAGAAACAGAGAAGCATGCTCCAATACCTTGTCGTGAACTTTCACAACATTCGCGATCAAATAATCATGTAGACACTGAAAGGACTACTGAGGGTACAAAAGCTGGAGGCGCAATCGGAACAGAAGACCTTTTAGCTTCTGAAGTAGCTGGTAGCTGGGCTTGCAATACTGCCCCTTCTCTGCATGGAGAAAATGAATCTCCAAGAAGCAGAGACAATACTGAAGGTTCCGGGGCATTACATGATTCAACTATCATGGTGGCCGAGAGTCAAAGCACTCCTGATGCTGATGCTACCAGACGGGATGAACGACGAGCACTAAGTGAGATGATTGGCATTGTTGCTCCTGATTTGAGAGAGCAATTTGGAGGTTCTGCATATGATTGTAATAAAGAGAGAGAAGACCATGGCGGTTCATCTGACTCGGATACAGAAAGTTGTAGTGACACTGGCAATGATGATAGAGCTAACGCAAAGGGTGGTTCAGTATCTGATGAAGAAACTCAGGGCAATGACCACCTGCGATCATTTTACTCCACTACTGAGGAGATACAAGTACTGTTTGCTAAGCAACAGGAACAATTGAAGGCTATGCAGAGAACGCTAGAAGATGAAGAGAATTATGAGAATACTTCTGTAGACATGGATGGAGTCATAGGTGGGACCTCAGGAAGAGAAAAAGATGTTGCAGAATACCACAGCAACAGTGCTGCCAAGGCAGGATCAACTACTTCTGCACAGAAACTCAAGAGAGATCAAATTGAAACATCGAGCAATGAAGCAAGTGTCACTGAGAAGCATGACTGTGATATAAGGAGTGAAGAATGCCAAAATACACAAGAGGCAGAATTCACCAGTGCTGATCATGACCATGGTGTCAGAGATGGCTTTGGCTCTGATGTTGATGGTGTTGGCACAGCAGTTATGATGGAAGGAGATGATGTTGGCACCGAAAGAGTTCTTGAAACTGAAAGTCCTGCAAATTATGGTGAACGGACTTTTGATTTGAACAAGGGTGGTCCTATAGAAGGGGACACCATGCAGTTCGACGATGATATCCATGTACAAGAAACAGAGAAGCATGCTCCAATACCTTGTCGTGAACTTTCACAACATTCGCGATCAAATAATCATGTAGACACTGAAAGGACTACTGAGGGTACAAAAGCTGGAGGCGCAATCGGAACAGAAGACCTTTTAGCTTCTGAAGTAGCTGGTAGCTGGGCTTGCAATACTGCCCCTTCTCTGCATGGAGAAAATGAATCTCCAAGAAGCAGAGACAATACTGAAGGTTCCGGGGCATTACATGATTCAACTATCATGGTGGCCGAGAGTCAAAGCACTCCTGATGCTGATGCTACCAGACGGGATGAACGACGAGCACTAAGTGAGATGATTGGCATTGTTGCTCCTGATTTGAGAGAGCAATTTGGAGGTTCTGCATATGATTGTAATAAAGAGAGAGAAGACCATGGCGGTTCATCTGACTCGGATACAGAAAGTTGTAGTGACACTGGCAATGATGATAGAGCTAACGCAAAGGGTGGTTCAGTATCTGATGAAGAAACTCAGGGCAATGACCACGTCGAGGAGGACCAGAAGCAGGATGATTCCATGAATGAAGATGATGAGGCCACTCAAGAAGATTGA

Protein Sequence

>Glyur003762s00039162.1
MAMEDEKSETPRPNNTVAVAVGGSEDSPKKQVGENSPKKQASTPSMSARDRIVSVASNLASQPLHNSDPDVWGVLTAISNYARKRHQGINILLTADEHCIGRLVEDVRFQIDSNSVSANHCRIYRTRITXENMENTTSIFLKDTSTNGTYLNWEKLKKNGAAVKVCHGDIISFAAPPQHEIAFAFVYREVQVSTSXPANAVAKRKAEDFVSENKRLKGLGIGAPEGPISLDDFRSLQRSNSELRKQLENQVVIIDTLRSDNRAAVERHETELKSAKESVAKCYLDQLKELQQMVDLKQKELGDVNRAFAEQKHALEDLNERLXASMQSCAEANALINSQKVNIAELKEQVDEERTQRKEEREKAAADLKAAVHRGQSEAQEEIKRLSDAALRRETELQEAINKLKESEKETCLLVETLRSKLEDTRQKLVVSDNKVRQLETQVHQEKLTNENGMKKIEELEQETRRLRKELESEKEDTRQKLVVSDNKVRQLETQVHQEKLTNENGMKKIEELEQETRRLRKELESEKLAREEAWAKVSVLELEINAAMRDLDFEKRRLKGARERLMLRETQLRSFYSTTEEIQVLFAKQQEQLKAMQRTLEDEENYENTSVDMDGVIGGTSGREKDVAEYHSNSAAKAGSTTSAQKLKRDQIETSSNEASVTEKHDCDIRSEECQNTQEAEFTSADHDHGVRDGFGSDVDGVGTAVMMEGDDVGTERVLETESPANYGERTFDLNKGGPIEGDTMQFDDDIHVQETEKHAPIPCRELSQHSRSNNHVDTERTTEGTKAGGAIGTEDLLASEVAGSWACNTAPSLHGENESPRSRDNTEGSGALHDSTIMVAESQSTPDADATRRDERRALSEMIGIVAPDLREQFGGSAYDCNKEREDHGGSSDSDTESCSDTGNDDRANAKGGSVSDEETQGNDHLRSFYSTTEEIQVLFAKQQEQLKAMQRTLEDEENYENTSVDMDGVIGGTSGREKDVAEYHSNSAAKAGSTTSAQKLKRDQIETSSNEASVTEKHDCDIRSEECQNTQEAEFTSADHDHGVRDGFGSDVDGVGTAVMMEGDDVGTERVLETESPANYGERTFDLNKGGPIEGDTMQFDDDIHVQETEKHAPIPCRELSQHSRSNNHVDTERTTEGTKAGGAIGTEDLLASEVAGSWACNTAPSLHGENESPRSRDNTEGSGALHDSTIMVAESQSTPDADATRRDERRALSEMIGIVAPDLREQFGGSAYDCNKEREDHGGSSDSDTESCSDTGNDDRANAKGGSVSDEETQGNDHVEEDQKQDDSMNEDDEATQED

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03762	4514	14957	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003762s00039162.1	PF00498.21	FHA	100	173	2.60E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.753
SRR1783600	control	3.878
SRR1783602	moderate drought stress	7.143
SRR1811619	moderate drought stress	7.083

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.274
DRR006520	Root Summer glycyrrhizin high producing strain	6.099
DRR006521	Root Winter glycyrrhizin high producing strain	4.351
DRR006522	Root Winter glycyrrhizin high producing strain	4.376
DRR006523	Root Summer glycyrrhizin low producing strain	9.391
DRR006524	Root Summer glycyrrhizin low producing strain	8.835
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.486
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.345

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.118
SRR2868004	Drought Stress (root)	12.402
SRR2967015	Control (root)	15.199

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.335
SRR9715740	Leaf	2.622
SRR9715741	Leaf	2.303
SRR9715739	Root	0.377
SRR9715742	Root	3.506
SRR9715743	Root	3.349

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.179
SRR8749028	MeJA induced 9h	10.735
SRR8749029	MeJA induced 9h	6.285
SRR8749030	Uninduced	2.091
SRR8749031	Uninduced	1.443
SRR8749032	Uninduced	1.225

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.296
SRR8400027	Control - Root	10.993