Gene detail

Gene detail information of Glyur003747s00045272.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	ATCG01080.1	2.00E-20	NADH:ubiquinone/plastoquinone oxidoreductase, chain 6
NR	XP_003621688.1	3.10E-75	NAD(P)H-quinone oxidoreductase subunit 6 [Medicago truncatula]
COG	YP_007131423.1	4.00E-11	NAD(P)H-quinone oxidoreductase subunit 4L [Stanieria cyanosphaera PCC 7437]
Swissprot	tr\|B5LMS3\|NU6C_CICAR	1.00E-44	NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic
trEMBL	tr\|G7KTU2\|G7KTU2_MEDTR	1.00E-75	NADH-ubiquinone/plastoquinone oxidoreductase chain 6 {ECO:0000313\|EMBL:AES77906.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03747	2789	3540	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05578	ndhG	EC:1.6.5.3	Oxidative phosphorylation	map00190

Gene Ontology

biological_process

GO:0042773 ATP synthesis coupled electron transport

GO:0055114 oxidation-reduction process

molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003747s00045272.1	PF00420.19	Oxidored_q2	84	127	3.70E-10

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	2.759
SRR1783600	control	3.003
SRR1783602	moderate drought stress	2.774
SRR1811619	moderate drought stress	2.417

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.108
DRR006520	Root Summer glycyrrhizin high producing strain	1.110
DRR006521	Root Winter glycyrrhizin high producing strain	0.522
DRR006522	Root Winter glycyrrhizin high producing strain	0.664
DRR006523	Root Summer glycyrrhizin low producing strain	1.625
DRR006524	Root Summer glycyrrhizin low producing strain	2.460
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.321
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.234

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.097
SRR2868004	Drought Stress (root)	0.082
SRR2967015	Control (root)	0.118

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.386
SRR9715740	Leaf	1.478
SRR9715741	Leaf	2.576
SRR9715739	Root	2.409
SRR9715742	Root	0.349
SRR9715743	Root	0.405

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.239
SRR8749028	MeJA induced 9h	0.182
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.210
SRR8749031	Uninduced	0.067
SRR8749032	Uninduced	0.062

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.050
SRR8400027	Control - Root	0.041