Gene detail

Gene detail information of Glyur003745s00043134

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	2.00E-76	NB-ARC domain-containing disease resistance protein
NR	XP_003624016.1	0	Disease resistance protein RGA2 [Medicago truncatula]
COG	YP_001277443.1	4.00E-12	NB-ARC domain-containing protein [Roseiflexus sp. RS-1]
Swissprot	tr\|Q7XBQ9\|RGA2_SOLBU	4.00E-116	Disease resistance protein RGA2
trEMBL	tr\|A2Q4E5\|A2Q4E5_MEDTR	0	Disease resistance protein (CC-NBS-LRR class) family protein {ECO:0000313\|EMBL:AES80234.1}

Sequence

Transcript Sequence

>Glyur003745s00043134.1
ATGGCCGAAACACTCCTCTTCAGCCTTGCAGAGTCTTTTATTGGGAAGCTTGCTTCTCGTGCTGTTGAAGAAGCTTCTCTGGCATTGGGCGTGTACGACGATTTGCGAGAGATCAGAGACACCGTGACATTCATCAAGGCTGTGTTGTTGGATGCTGAGCAAAAGCAGCAGCAGAACCATGAGTTGCGGGTATGGCTAAAGCAGATCAAGCGTGTCCTCTATGAAGCNGAAGACGTAATCGACGATTTCGAGTGCGAGGCATTACGGAAGCATGTGGTCAACGCCTCCGGTAGCAACAGAAGGAAGGTACGCCGTTTCTTTTCATGTTCTAATCCTCTTGTTTATCGCCTTAGAATGGCACATCAAATCGAAGACGTCAAAAGGAGGTTGAAAAAGGTTGCCGATGATAGGCATAATTTTGGCCTTCAAATCAATGATAGTGATAATCGTGTTGTGCACACACGGGAATTGACTCATTCCCATGTAATTGATTCCGATGTGATAGGAAGGGAGCATGATAAACAAAAAATCATAGATCTCATATTGCAAGATGATGGTGTTGATAAAAAAAGTCTATCTGTCATTCCTATTGTGGGAATTGGAGGTTTAGGAAAGACTACACTTGCAAAGACAGTGTTCAATGACAAGAGTATAATTGAGTCTTTCCCATTGAAAATGTGGGTATGTGTCTCCGATGATTTTGAACTTAAAAACTTGCTTACTAAAATCCTTGACTCTACTACCCGTAGTCCTTCTGCTCCTGCCCAAACTCACCAAGAAATTTTGAATAACTGTAATGTGGAGCAACTACAAAATAACCTGAGAAATACACTTGTTGGTCAAAAGTTTTTGCTTGTCTTGGACGATGTTTGGAACGAAGACCATGTCAAATGGGTTGAGTTGAGGNATTTACTACGAGTAGGGGCTGAAGGAAGTAAAGTCCTAGTGACCACCCGTAGCCACTCAATAGCTGACATGATGGGCACTCACACTCACNNGTCTTACACTTTGCAAGGTCTTTCTAGAGAGGACTCCTTGTCTNTATTTGTCAAATGGGCTTTTAAAGAAGGAGANGAGAAAAAATATCCAGAGTTGATGGATATTGGGGAAGAAATTGTGCAAAGATGTGGAGGGCTTCCATTGGCCCTGAGAACATTAGGGAGTTCACTATTCTTAAAAGTTGATGTAGAAGAGTGGAAGTTTGTCCGGGACAGTGAGATTTGGAATTTACCACAAAAAGAAGATGACATTTTACCAGCCATCAAATTAAGTTATGATCAATTGCCTTCTTATCTCAAACCATGTTTTGCTTGCTTCTCCCTCTTTGAAAAGGACTTTGTTTTTAATAATTTTAATGTTGTTGTGCTTTGGGAGGCACTCGGTTTTCTTCCATCACCAAAGAAGGGTAAAACTTTGGAAGACACTGGCAATCAATTTTTGCATGAACTACGGTCAAGATCTTTTCTACAAGATTTTGTTGACTTTGGTANTGNTTGCANNTTTAAATTACANGATNTAGTGCANGATCTTGCACTGTANNTNNCAAGAGATGAGTTTCAATTGTTGAAATCCCGTGGTGAAAATATATCTGGGAATGTCTTGCATTTGTCATTTATTAATAATGATTTGTTGTGTCAAACTCCAATTCCATCAGGTTTGAGAACCATACTTTTTCCTGTTGGAGCCAACGATCAAGCTTTCTTGAATACCTTGGTGTCAAGATGCAAATACTTGCGGGTTTTGCAATTAAGTAAATCGAGATATAAGAGTTTTCCTAGCTCTATTGGTAAATTAAAACATTTAAGATGTCTCGATCTTAATGATAATGAAGAACTCGAGAGGCTTCCTGATTCAGTGTGCAAACTCCAAAGCTTGCGATCTTTGATACTTGGTGGATGCACAAAGCTACAAGCTCTGCCGAATGGAATAGGAAACTTGATCAACCTTCGACTACTAGATATAACCACAAAGCAGTCAAACTTTCCGAACAAAGAGATTGCAAACTTGACTTCTCTAGATATTTTATCTGTTGGTAATTGTGACAACTTGGAAGCATTGCTTGAAGGAATACAAGTTCCTAGTCTTAAATTGTTGGGAATTGGTTCTTGTGAAAATCTAAAGTCTTTGCCGCTTCACGCTATTCCAAACTTGGAGAGTTTGATGATTGAGATTGCGACAATTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03745	10250	12433	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003745s00043134.1	PF00931.17	NB-ARC	172	464	1.60E-66

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.238
SRR1783600	control	0.193
SRR1783602	moderate drought stress	0.026
SRR1811619	moderate drought stress	0.026

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.349
DRR006520	Root Summer glycyrrhizin high producing strain	0.369
DRR006521	Root Winter glycyrrhizin high producing strain	0.152
DRR006522	Root Winter glycyrrhizin high producing strain	0.125
DRR006523	Root Summer glycyrrhizin low producing strain	0.781
DRR006524	Root Summer glycyrrhizin low producing strain	1.365
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.875
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.827

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.473
SRR2868004	Drought Stress (root)	26.730
SRR2967015	Control (root)	18.147

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.033
SRR9715739	Root	0.139
SRR9715742	Root	0.208
SRR9715743	Root	0.028

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.077
SRR8749029	MeJA induced 9h	0.112
SRR8749030	Uninduced	0.044
SRR8749031	Uninduced	0.070
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.350
SRR8400027	Control - Root	0.290