Gene detail information of Glyur003742s00042835 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G20540.1 | 3.00E-16 | BREVIS RADIX-like 4 |
| NR | KHG10956.1 | 5.36E-59 | Protein Brevis radix-like 4 [Gossypium arboreum] |
| Swissprot | tr|Q8GZ92|BRXL4_ARATH | 1.00E-33 | Protein Brevis radix-like 4 |
| trEMBL | tr|M5VVY0|M5VVY0_PRUPE | 2.00E-47 | Uncharacterized protein {ECO:0000313|EMBL:EMJ05564.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03742 | 4155 | 13257 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003742s00042835.1 | PF13713.1 | BRX_N | 44 | 66 | 3.00E-10 |
| Glyur003742s00042835.2 | PF08381.6 | BRX | 75 | 95 | 4.10E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.853 |
| SRR1783600 | control | 8.749 |
| SRR1783602 | moderate drought stress | 11.383 |
| SRR1811619 | moderate drought stress | 11.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.689 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.081 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.145 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.141 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.886 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.167 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.049 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.959 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.177 |
| SRR2868004 | Drought Stress (root) | 14.330 |
| SRR2967015 | Control (root) | 16.827 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.323 |
| SRR9715740 | Leaf | 4.931 |
| SRR9715741 | Leaf | 6.625 |
| SRR9715739 | Root | 14.099 |
| SRR9715742 | Root | 18.073 |
| SRR9715743 | Root | 16.105 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.770 |
| SRR8749028 | MeJA induced 9h | 2.607 |
| SRR8749029 | MeJA induced 9h | 3.649 |
| SRR8749030 | Uninduced | 0.395 |
| SRR8749031 | Uninduced | 0.647 |
| SRR8749032 | Uninduced | 1.631 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.118 |
| SRR8400027 | Control - Root | 16.907 |