Gene detail

Gene detail information of Glyur003733s00046048

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G37740.1	2.00E-58	Calcium-dependent lipid-binding (CaLB domain) family protein
NR	XP_003552975.1	2.85E-103	PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 isoformX1 [Glycine max]
Swissprot	tr\|Q8L7A4\|AGD11_ARATH	4.00E-41	Probable ADP-ribosylation factor GTPase-activating protein AGD11
trEMBL	tr\|C6SYG2\|C6SYG2_SOYBN	1.00E-102	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G33760.1}

Sequence

Transcript Sequence

>Glyur003733s00046048.1
AACAATTATTTGGATGGATCGCATTGGTATGAAAAGGAGAAGAATTAGGAAACCACTCTTCTCGGGTCTTTTGCAATAAAGAGAGAAGAACTAGTCCCAACAAAGAACAAGAAACAAAGAACTTTCAGCTTTTTAAATATTGCTGCAAGCCTGCAACTGCAACCATTTTGGTGCTTGAGCCAACCAGGGGGGTCCCTTGATTACCACCACTTTATAATTTGTTCTCTCTTGAAAAAATCTATTCTATTCTGCTTAATTTCCTCATAATTTTTCATTCATCCATGGAGAACTTGTTGGGTCTGCTGAGAATTCATGTTGAAAGAGGGGTCAATCTTGCTATCAGGGATGTAGTGAGCAGTGACCCTTATGTTGTCATCAAAATGGGCAAACAGAAGCTGAAGACTAAGGTAGTGAACAAGAATCTAAATCCTGAGTGGAATGATGACTTGACTTTATCCATTTCAGATCCACATGCTCCAATCCAACTGTTTGTGTATGACAAGGACACATTTAGCTTGGATGACAAAATGGGGGATGCTGAGTTTGTCATTGGTCCATTCCTTGAAGCAATTAAGATGCGCCTGGNAGGTCTCCCTAATGGTACCATAGTCACAAAAGTGCAAGCTAGCAGAGAAAACTGCTTAGCAGAAGAGAGTCACATTGTCTNGAAGGATGGCAAAGTGATCCAAAACATGGTTCTTAGACTCAGAAATGTTGAAAGTGGGGAAGTGGAGCTTCAGTTGCATTGGATTGACATTCCTGGTTCAAGGGGTCTGTAAGAATCACAAAAGATACTTCTTAATTGGCAATACTGTGTAAAGATGAGACTTGNAGCCACATAAACCAGCAACACCTTATTATGCTTTATAATTTCTCTGGTCCTTTATTATTCTTTTTTTCTTCTTTCAAATGACTTAAAAATGGTTCAAGAATATATTGTATTGCAATGACTAGTAGTAGTGAGTGAAAAGAATGGGAAATGTTGTTTGTTTCCCTTGTTGTAATTCAGACTTTGAATTATGTGTCAGTACTTAGTCTTGTGTAATGTACAAGAAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03733	14831	17094	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003733s00046048.1	PF00168.25	C2	8	86	9.00E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.797
SRR1783600	control	9.657
SRR1783602	moderate drought stress	12.295
SRR1811619	moderate drought stress	12.066

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.654
DRR006520	Root Summer glycyrrhizin high producing strain	15.324
DRR006521	Root Winter glycyrrhizin high producing strain	13.087
DRR006522	Root Winter glycyrrhizin high producing strain	12.523
DRR006523	Root Summer glycyrrhizin low producing strain	11.781
DRR006524	Root Summer glycyrrhizin low producing strain	12.219
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.137
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.069

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	43.722
SRR2868004	Drought Stress (root)	63.547
SRR2967015	Control (root)	47.596

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	39.579
SRR9715740	Leaf	36.829
SRR9715741	Leaf	46.426
SRR9715739	Root	8.989
SRR9715742	Root	11.135
SRR9715743	Root	10.826

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.834
SRR8749028	MeJA induced 9h	13.857
SRR8749029	MeJA induced 9h	16.022
SRR8749030	Uninduced	7.150
SRR8749031	Uninduced	2.443
SRR8749032	Uninduced	3.825

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.989
SRR8400027	Control - Root	19.500