Gene detail

Gene detail information of Glyur003728s00047076.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47570.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_004512338.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Cicer arietinum]
COG	YP_004775215.1	1.00E-48	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGP4\|Y3475_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor)
trEMBL	tr\|I1L148\|I1L148_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G05550.1}

Sequence

Transcript Sequence

>Glyur003728s00047076.1
TTTGATTTTTGCTCTACTTGTTGCCACCGGTATTTAAATCCATCAAACGAAGGGAAGGAACATGCTTCCTCTGTATTCCAATCTGACCTCAATACAGCGAGCTATATAGCACAAGAGAACCCACGATCTAGTAGCCTCTTGCCCCTAAACCAATTAATGAAGCCTTTTTCTTTCTTGTTACCTATGTTTTGGTATGCATGCTTTCATCTGTTTCTTTTCTTTACTTTAAACTTAATGTGGTTTGGCCAAAACAGAACTGTGGCCTTGGCATTAAGAAACCATACCGATCATTTGGCATTGCTCAAATTTAAGGAATCAATACCCATTGACCCTTATGGAGTCCTAGATTCTTGGAATAGTTCTACTCACTTTTGCAACTGGCATGGAGTCACATGCAGCCCCATGCACCAAAGAGTAAGAACGTTGAACTTATCAGGATATCATTTGCATGGATCCTTGTCCCCCCATGTTGGCAATCTCTCTTTTATGAGAAACCTTAACCTTTCAAATAACAACTTCGTTGGAAAAATCCCACATGAACTGGGTCGATTGTTACGATTGCGTCAACTCCATTTGGCCAATAATTCATTTGAAGGGGAGATTCCGACAAACCTAACAAATTGCTCCAATATTAGAGTCTTATTGTTGGAGGGGAACAATCTGACTGGCAAAATACCAACTCAAATAGGCTCTCTTCAAAAGCTTGAAGTATTTGGCATTTGGAGAAACAATTTAACCGGAGGAGTATCACCATTCATAGGGAATCTTTCATCCTTAACATCTCTTGATGTTGGTTCTAACAACTTAGAGGGAGATATACCACAAGAATTATGTCTCCTCAAAAACTTGACAATGATATCCATGGGTGTCAACAAACTATATGGTACAATTCCTACTTGTCTTTACAATATGTCATCTCTTACTGTGATCGTAATTGCAATGAATCGCTTTGATGGCTCTCTTCCACCCAACATGTTCCACACCCTCCCCAATCTCAAGTTTTTTGAACTTGGCATAAATCAATTCTCAGGTCCAATCCCCACTTCCATTGCAAATGCTTCTAGCCTTGGGGTGCTTGATATCCCTGAAAATTATTTTGTCGGACAAGTCCCAAGTCTAGGGAGTCTACCACATCTTTGGTGGGTAAATATTGAAATGAACAATCTAGGTGACAATTCAACTAAGGATTTGGAGATGTTAAAATCATTGACAAACTGCAGTAAGTTAAATTTTCTCTCCATATCTGACAATAATTTTGGAGGCCATTTACCAAACTCAGTGGGAAATTTGTCCACCCAACTCGGTCAATTTTGTCTTGAGGGTAATCAGATATCAGGGCAAATTCCTGTAGAATTAGGAAATCTAATTAGCTTAATTCTCCTGACCATGGAAAATAACTATTTGGAAGGGATGATTCCAACTACTTTTGCGAAATTTCAGAAGATGCAAGAGTTAGATTTGAGTGGAAACAAACTATCAGGAGACATACCAGCCTCCATAGGCAACCTCAGTCAGTTGTATTATTTGGGTATAGGAGGCAATATGTTGGAAGGAAGTATTCCTCCAAGCATAGGGAATTGCCAAAATTTACAATATCTAAATCTTTCGCAAAACAAGCTTAGTCGAGCCATACCCTTAGAGATTTTTGGTCTATCATCTCTAACAATGGGACTGGACTTATCACACAACTCACTAAGTGGCAGTCTACCTAAGGAAGTAGGCCAGTTACAAAATATTGGGCAGTTTGATGTCTCTGAAAATCGTTTGTCTGGTGAAATTCCTGGAACCATAGGTGAATGCACAAGCTTGGAGTCTCTTTATTTGCAAGGGAATATCTTCCGTGGAACCATACCGTCCTCTTTGGCTTCGATCAAAGGCCTGCAACATTTAGACCTATCACGAAACCGCTTATCTGGATCAATTCCGAAAGGTCTACAAAATATTTCTTTTCTTGTATACTTCAATGTATCTTTTAACATGTTGGACGGCGAGGTGCCAACTGAAGGAGTCTTTGGAAATGCAAGTGGGTTAGCAGTAACAGGAAACAATAACCTTTGTGGGGGTATTTCAGAGTTGCATCTACTGCCATGCCCTGCCAAAGGTATGAAACTAGCAAAACACCATAATTTCAGGTTGATAACGGTGATAGTTAGTGTGGTTGCTTTTCTACTCATACTGCTATTTATTCTAACTATCTATTGGATGAGGAAAAGAAACAAGAAGCCATCTTCTAATTCACCAACAATTGATCAACTGGCTAAGGTTTCATATCAAAACCTCCACAACGGAACCGATGGGTTCTCCACTAGGAACTTGATGGGTTCTGGAAATTTCGGCTATGTCTACAAAGGAACTCTTGACTTAGAAGACAGAGTTGTTGCCGTAAAGGTCCTGAACCTTCAAAAGAAGGGAGCTCACAAGAGTTTCATTTCTGAATGTAATGCACTCAAAAATATTAGACATCGAAATCTGGTTAAGATTTTAACATGTTGTTCCAGCACTGATTACAAAGGTCAAGAATTCAAAGCTTTGGTTTTTGAGTACATGGAGAATGGAAGCTTAGAACAATGGTTGCATCCAAGGACAGGAAGTGTGGAGGAGCTTCCTAAAGCATTGAATCTTGATCACAGGTTAAATATCATTATCGATGTTGCTTCTGCATTACATTATCTGCATCATGAATGCGACCAATTGGTTCTTCATTGTGATCTGAAGCCAAGCAATGTCCTTCTTGACGATGACATGGTTGCTCATGTGAGTGATTTTGGCATAGCAAGACTTGTCTCAACCATCGACTGCACCTCTCATAAGGAAACTAGTGGAAGTACAATTGGAATAAAAGGGACTATTGGTTATGCTCCTCCAGAGTATGGGATGGGTTCTCAAGTGTCCACATATGGTGACATGTATAGCTTTGGGATGCTTCTGTTGGAAATGCTTACCGGAAGAAGACCCACTGATGAAATGTTTGAAGATGGTCAAAATCTGTATAAGTTTGTTGAAATTTCATTTCCTGATAATCTTATACATGTTTTAGACCCACATCTTGTACCAAGCGATGAAGTAGCAGCAATAGAAGATGGAATCAGTGGGAATCTTATTCCAACTGTAGAGAAGTGCTTAGTTTCACTTTTTGGGATTGGTCTTGCTTGTTCAATGGAATCACCGAAAGAAAGAATGAATATAGTGGATGTCACAAGAGAGCTAAACATAATCAAAAAGACGTTTCTCACAGGTGATGTACATTGA

Protein Sequence

>Glyur003728s00047076.1
FDFCSTCCHRYLNPSNEGKEHASSVFQSDLNTASYIAQENPRSSSLLPLNQLMKPFSFLLPMFWYACFHLFLFFTLNLMWFGQNRTVALALRNHTDHLALLKFKESIPIDPYGVLDSWNSSTHFCNWHGVTCSPMHQRVRTLNLSGYHLHGSLSPHVGNLSFMRNLNLSNNNFVGKIPHELGRLLRLRQLHLANNSFEGEIPTNLTNCSNIRVLLLEGNNLTGKIPTQIGSLQKLEVFGIWRNNLTGGVSPFIGNLSSLTSLDVGSNNLEGDIPQELCLLKNLTMISMGVNKLYGTIPTCLYNMSSLTVIVIAMNRFDGSLPPNMFHTLPNLKFFELGINQFSGPIPTSIANASSLGVLDIPENYFVGQVPSLGSLPHLWWVNIEMNNLGDNSTKDLEMLKSLTNCSKLNFLSISDNNFGGHLPNSVGNLSTQLGQFCLEGNQISGQIPVELGNLISLILLTMENNYLEGMIPTTFAKFQKMQELDLSGNKLSGDIPASIGNLSQLYYLGIGGNMLEGSIPPSIGNCQNLQYLNLSQNKLSRAIPLEIFGLSSLTMGLDLSHNSLSGSLPKEVGQLQNIGQFDVSENRLSGEIPGTIGECTSLESLYLQGNIFRGTIPSSLASIKGLQHLDLSRNRLSGSIPKGLQNISFLVYFNVSFNMLDGEVPTEGVFGNASGLAVTGNNNLCGGISELHLLPCPAKGMKLAKHHNFRLITVIVSVVAFLLILLFILTIYWMRKRNKKPSSNSPTIDQLAKVSYQNLHNGTDGFSTRNLMGSGNFGYVYKGTLDLEDRVVAVKVLNLQKKGAHKSFISECNALKNIRHRNLVKILTCCSSTDYKGQEFKALVFEYMENGSLEQWLHPRTGSVEELPKALNLDHRLNIIIDVASALHYLHHECDQLVLHCDLKPSNVLLDDDMVAHVSDFGIARLVSTIDCTSHKETSGSTIGIKGTIGYAPPEYGMGSQVSTYGDMYSFGMLLLEMLTGRRPTDEMFEDGQNLYKFVEISFPDNLIHVLDPHLVPSDEVAAIEDGISGNLIPTVEKCLVSLFGIGLACSMESPKERMNIVDVTRELNIIKKTFLTGDVH

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03728	2478	5852	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003728s00047076.1	PF08263.7	LRRNT_2	95	133	1.00E-12
Glyur003728s00047076.1	PF00560.28	LRR_1	164	184	0.48
Glyur003728s00047076.1	PF13516.1	LRR_6	256	278	0.57
Glyur003728s00047076.1	PF00560.28	LRR_1	482	503	0.016
Glyur003728s00047076.1	PF12799.2	LRR_4	505	545	1.50E-07
Glyur003728s00047076.1	PF00560.28	LRR_1	627	647	0.0057
Glyur003728s00047076.1	PF00069.20	Pkinase	770	997	6.40E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.127
SRR1783600	control	0.101
SRR1783602	moderate drought stress	0.145
SRR1811619	moderate drought stress	0.134

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.082
DRR006520	Root Summer glycyrrhizin high producing strain	0.082
DRR006521	Root Winter glycyrrhizin high producing strain	0.051
DRR006522	Root Winter glycyrrhizin high producing strain	0.033
DRR006523	Root Summer glycyrrhizin low producing strain	0.147
DRR006524	Root Summer glycyrrhizin low producing strain	0.233
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.372
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.276

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.000
SRR2868004	Drought Stress (root)	0.000
SRR2967015	Control (root)	0.016

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.820
SRR9715740	Leaf	3.199
SRR9715741	Leaf	4.328
SRR9715739	Root	0.000
SRR9715742	Root	0.501
SRR9715743	Root	0.385

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.099
SRR8400027	Control - Root	0.317