Gene detail

Gene detail information of Glyur003717s00042100.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G36250.1	7.00E-12	aldehyde dehydrogenase 3F1
NR	XP_007132013.1	9.91E-25	hypothetical protein PHAVU_011G059400g [Phaseolus vulgaris]
COG	YP_156374.1	7.00E-10	NAD-dependent aldehyde dehydrogenase [Idiomarina loihiensis L2TR]
Swissprot	tr\|Q70E96\|AL3F1_ARATH	2.00E-12	Aldehyde dehydrogenase family 3 member F1
trEMBL	tr\|V7AEJ5\|V7AEJ5_PHAVU	4.00E-25	Uncharacterized protein {ECO:0000313\|EMBL:ESW04007.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03717	15410	16027	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00128	ALDH	EC:1.2.1.3	Glycolysis / Gluconeogenesis	map00010
			Ascorbate and aldarate metabolism	map00053
			Pyruvate metabolism	map00620
			Fatty acid degradation	map00071
			Glycerolipid metabolism	map00561
			Valine, leucine and isoleucine degradation	map00280
			Lysine degradation	map00310
			Arginine and proline metabolism	map00330
			Histidine metabolism	map00340
			Tryptophan metabolism	map00380
			beta-Alanine metabolism	map00410
			Insect hormone biosynthesis	map00981
			Limonene and pinene degradation	map00903
			Chloroalkane and chloroalkene degradation	map00625

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0055114 oxidation-reduction process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	3.334
SRR1783600	control	3.338
SRR1783602	moderate drought stress	3.395
SRR1811619	moderate drought stress	2.711

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.946
DRR006520	Root Summer glycyrrhizin high producing strain	1.220
DRR006521	Root Winter glycyrrhizin high producing strain	3.484
DRR006522	Root Winter glycyrrhizin high producing strain	3.977
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.778
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.489

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.726
SRR2868004	Drought Stress (root)	2.071
SRR2967015	Control (root)	2.552

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.347
SRR9715740	Leaf	1.150
SRR9715741	Leaf	2.167
SRR9715739	Root	1.440
SRR9715742	Root	5.236
SRR9715743	Root	5.295

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.126
SRR8749028	MeJA induced 9h	7.328
SRR8749029	MeJA induced 9h	14.904
SRR8749030	Uninduced	5.654
SRR8749031	Uninduced	9.157
SRR8749032	Uninduced	8.962

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.679
SRR8400027	Control - Root	6.056