Gene detail information of Glyur003717s00042099 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G19350.1 | 7.00E-71 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| NR | XP_003537962.1 | 3.71E-114 | PREDICTED: polyadenylate-binding protein RBP47B'-like isoform 1 [Glycine max] |
| COG | YP_003709088.1 | 2.00E-12 | RNA-binding protein [Waddlia chondrophila WSU 86-1044] |
| Swissprot | tr|Q8VXZ9|R47BP_ARATH | 1.00E-89 | Polyadenylate-binding protein RBP47B' |
| trEMBL | tr|I1LJV7|I1LJV7_SOYBN | 1.00E-114 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G14150.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03717 | 6777 | 8414 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| -- |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003717s00042099.1 | PF00076.17 | RRM_1 | 11 | 80 | 7.00E-15 |
| Glyur003717s00042099.1 | PF00076.17 | RRM_1 | 182 | 217 | 3.10E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.431 |
| SRR1783600 | control | 4.525 |
| SRR1783602 | moderate drought stress | 4.601 |
| SRR1811619 | moderate drought stress | 3.890 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.918 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.534 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.085 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.929 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.086 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.484 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.800 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.545 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.451 |
| SRR2868004 | Drought Stress (root) | 3.948 |
| SRR2967015 | Control (root) | 4.952 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.389 |
| SRR9715740 | Leaf | 0.117 |
| SRR9715741 | Leaf | 1.106 |
| SRR9715739 | Root | 1.256 |
| SRR9715742 | Root | 2.233 |
| SRR9715743 | Root | 2.347 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.096 |
| SRR8749028 | MeJA induced 9h | 0.815 |
| SRR8749029 | MeJA induced 9h | 0.554 |
| SRR8749030 | Uninduced | 0.122 |
| SRR8749031 | Uninduced | 0.366 |
| SRR8749032 | Uninduced | 0.999 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.361 |
| SRR8400027 | Control - Root | 1.741 |