Gene detail information of Glyur003706s00040905 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G29400.2 | 2.00E-143 | MEI2-like protein 5 |
| NR | XP_004516465.1 | 0 | PREDICTED: protein MEI2-like 2-like isoform X5 [Cicer arietinum] |
| COG | YP_007171730.1 | 7.00E-07 | RRM domain-containing RNA-binding protein [Dactylococcopsis salina PCC 8305] |
| Swissprot | tr|Q6ZI17|OML2_ORYSJ | 4.00E-173 | Protein MEI2-like 2 |
| trEMBL | tr|K7MR64|K7MR64_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G12730.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03706 | 3 | 5642 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003706s00040905.1 | PF00076.17 | RRM_1 | 198 | 262 | 1.60E-11 |
| Glyur003706s00040905.1 | PF00076.17 | RRM_1 | 283 | 348 | 9.10E-13 |
| Glyur003706s00040905.2 | PF00076.17 | RRM_1 | 198 | 262 | 1.60E-11 |
| Glyur003706s00040905.2 | PF00076.17 | RRM_1 | 283 | 348 | 9.10E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 26.987 |
| SRR1783600 | control | 26.925 |
| SRR1783602 | moderate drought stress | 36.474 |
| SRR1811619 | moderate drought stress | 40.930 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.813 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.422 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.019 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.801 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 38.420 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 38.422 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.582 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.529 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 32.969 |
| SRR2868004 | Drought Stress (root) | 41.818 |
| SRR2967015 | Control (root) | 50.412 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.434 |
| SRR9715740 | Leaf | 13.415 |
| SRR9715741 | Leaf | 17.176 |
| SRR9715739 | Root | 7.702 |
| SRR9715742 | Root | 19.889 |
| SRR9715743 | Root | 18.481 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.896 |
| SRR8749028 | MeJA induced 9h | 69.118 |
| SRR8749029 | MeJA induced 9h | 14.214 |
| SRR8749030 | Uninduced | 20.077 |
| SRR8749031 | Uninduced | 21.271 |
| SRR8749032 | Uninduced | 7.271 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 43.232 |
| SRR8400027 | Control - Root | 42.137 |