Gene detail

Gene detail information of Glyur003705s00036791

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G25650.1	0	ACD1-like
NR	XP_003629726.1	0	Pheophorbide a oxygenase [Medicago truncatula]
COG	YP_007141267.1	3.00E-83	Pheophorbide a oxygenase [Crinalium epipsammum PCC 9333]
Swissprot	tr\|Q8W496\|PTC52_ARATH	0	Protochlorophyllide-dependent translocon component 52, chloroplastic (Precursor)
trEMBL	tr\|G7LIM7\|G7LIM7_MEDTR	0	Chlorophyllide A oxygenase {ECO:0000313\|EMBL:AET04202.1}

Sequence

Transcript Sequence

>Glyur003705s00036791.1
AACAATTTAGTTGACTGTTAACCAAACTTAGCGTTGGTGATTGATCCCCATCCTTANTTAGATTTGTTTTTGTCCATTCAGAGTTCCAGGCTCTTGGTCACACACGTGGCTTTGTGATCAAANGCCACAAAGTGATAAGGTGCTCAATATTTGTCTGTTTTAGTTTCATTTCAAATCGAAATGTTCATTGAAGAAGCAAATTGGTAAAACGAAGCCAAATCATATGGTGGGTGCTGGCAAAACATGGACTTTCTCTCACATTGAGCCTCAAGTTTCATTTCATTGATTCATTACATAAAAATGAACAAGTAACAACCNAAACGTGAGCCTCTAGTTTCAACAACATCTGTTGAATTGAAGCATTTCACTTTGGAGTGTCCGTNTTCTGTTGCCACTTTTCTTCTCTTCTAGTTTGCAGAAGGGAAGCTATGGTAGCTTTTTCTTTGCGTTCACTTCACATCCGAGTAACACCTGAAACAACAACAACCCCACTTAGGAAATCCATGTTNTTGAGCACACAAGNCANTTCACTCTTTCCATTGGTTCGNNGGAACAATTCAAAATCCAAGCTTTTCACTGCACTATCACCNTCTCCATTGACAGAGCCCAGCAACCTGCAGCCTGAGGATGAAGCAGAAGTAGAAGCAAGTGATGAGAAATTTGACTGGTACTCGCAGTGGTACCCACTGATGCCAATTTGTGACCTTGACAAGAGGGCACCTCATGCCAAGAGGGTGATGGGAATTGATGTGGTTGTGTGGTGGGATAGGAATGAGGGTNCTTGGAAGGTCTTTGATGATGCTTGTCCTCATAGATTGGCACCTTTGTCTGAAGGAAGGATTGATCAATGGGGCAGGTTGCAGTGTGTTTACCATGGTTGGTGTTTTAATGGGTCAGGAGATTGCAAGTTCATTCCTCAGGCACCCCCTGAAGGACCTCCGGTTCATACTTCCAAAAGAGCATGTGTAGCTGCTTACCCAAGCACTGTGCAGAATGATATCTTGTGGTTTTGGCCAAATACTGACCCTCAATACAAAGACATTATTGCAACCAAAAAACCCCCATACATACCAGAAATAGNTGATCCATCGTATACTAAATCAATGTCGAGCAGAGAAATTCCTTATGGGTATGAAGTACTGATTGAAAACCTTATGGACCCTGCACATGTTCCATATGCACACTATGGATTAATGCGTACTCCNCAACCAAAAGGCAGGCAGAAAGCNGATAGAGAAGGGGGCAGGCCACTCGAAATGTCAATTGAAAAGTTAGATATAAATGGCTTCAGAGCAAAACAAAGTTGGAACAAAAGCAAATTTATGCCACCATCCATTTATTATGCGTATACTAATCCAGATAAACCTGCATCATCTCCTGAAACTCAGAAATCATCAGTTCAGAAGAGATTTGCTTTGATCTTTATTTGCATTCCAGTAAGTCCTGGTAAAAGCAGATTAATATGGTGCTTCCCAAGAAACTTCGGAGTGTGGATTGATAAAATTGTACCACGATGGATGTTTCATGTGGGACAGAACCTGATTCTAGATTCAGATTTATATCTTCTCCATGTTGAGGAACATAAACTAATGGATGCTGGTCAAGCCAACTGGCAAAAGGCATGTTTTGTGCCAACAAAGTCAGATGCACTTGTGATTGGTTTTAGAAAGTGGTTAAAGAAGTATGCAGGTGGTCAAGTTGATTGGAGAGGAAAATATAGTAGTGGGGTTCTTCCTCCTACACCTCCCAGAGAACAGCTTATGGACAGGTATTGGAGCCATGTGGTGAATTGCAGGAGTTGCAGTTTTGCTTATAAGAGCCTCAATGTGGTTGAAGTCNTGCTGCAGATCCTATCTNTTGCCTCAATTGGGATTGTTGCCACAATGAAGCATGGTGTGACCTCAGTGGCAACAAGAAACTCAATGGTTGTGTTGGCAGTACTTTCATTTGCTTTGTCTAGGTGGTTAGCTCACTTCATATACAAGAACTTCCATTATCATGATTACAACCATGCCTTTCGCTGAAATGTGTTTTCCATAGTCATTGGTGTCTAGCTATATGTATATATGGTGAAGTTCTACAAAAACAAAGGCACCAAGTATAGGTACTNCGGAGGAGTTTTGGAACATTTGTGCATGTATTACATAACTGCGTATTACATATTACTCTCTCCGTCCCAAAACTTTGGTGTTTTTAGCTTTTATTTATTATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03705	13346	17015	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0010277 chlorophyllide a oxygenase [overall] activity

GO:0016491 oxidoreductase activity

GO:0051537 2 iron, 2 sulfur cluster binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003705s00036791.1	PF00355.21	Rieske	83	172	4.50E-17
Glyur003705s00036791.1	PF08417.7	PaO	298	397	3.30E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.017
SRR1783600	control	0.017
SRR1783602	moderate drought stress	0.103
SRR1811619	moderate drought stress	0.102

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.049
DRR006521	Root Winter glycyrrhizin high producing strain	0.244
DRR006522	Root Winter glycyrrhizin high producing strain	0.222
DRR006523	Root Summer glycyrrhizin low producing strain	0.200
DRR006524	Root Summer glycyrrhizin low producing strain	0.202
DRR006525	Leaf Summer glycyrrhizin high producing strain	100.813
DRR006526	Leaf Summer glycyrrhizin high producing strain	100.227

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.159
SRR2868004	Drought Stress (root)	0.434
SRR2967015	Control (root)	0.023

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	86.785
SRR9715740	Leaf	153.044
SRR9715741	Leaf	73.397
SRR9715739	Root	0.045
SRR9715742	Root	0.144
SRR9715743	Root	0.138

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.096
SRR8749028	MeJA induced 9h	0.121
SRR8749029	MeJA induced 9h	0.028
SRR8749030	Uninduced	0.042
SRR8749031	Uninduced	0.049
SRR8749032	Uninduced	0.077

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.139
SRR8400027	Control - Root	0.137