Gene detail information of Glyur003705s00036790.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38500.1 | 0 | Protein of unknown function (DUF616) |
| NR | XP_004504320.1 | 0 | PREDICTED: uncharacterized protein LOC101505568 isoform X1 [Cicer arietinum] |
| COG | YP_005066426.1 | 4.00E-07 | hypothetical protein [Arthrospira platensis NIES-39] |
| trEMBL | tr|A0A072TTY8|A0A072TTY8_MEDTR | 0 | Plant/F20M13-60 protein {ECO:0000313|EMBL:KEH20661.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03705 | 6821 | 12155 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003705s00036790.1 | PF04765.8 | DUF616 | 137 | 445 | 1.80E-130 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.970 |
| SRR1783600 | control | 9.885 |
| SRR1783602 | moderate drought stress | 8.550 |
| SRR1811619 | moderate drought stress | 8.434 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.739 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.722 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.073 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.520 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.611 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.458 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.664 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.651 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.916 |
| SRR2868004 | Drought Stress (root) | 17.493 |
| SRR2967015 | Control (root) | 16.910 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.069 |
| SRR9715740 | Leaf | 10.946 |
| SRR9715741 | Leaf | 9.622 |
| SRR9715739 | Root | 3.739 |
| SRR9715742 | Root | 9.899 |
| SRR9715743 | Root | 7.990 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.137 |
| SRR8749028 | MeJA induced 9h | 10.541 |
| SRR8749029 | MeJA induced 9h | 8.753 |
| SRR8749030 | Uninduced | 8.484 |
| SRR8749031 | Uninduced | 6.121 |
| SRR8749032 | Uninduced | 4.533 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.337 |
| SRR8400027 | Control - Root | 19.447 |