Gene detail information of Glyur003703s00043726 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G27745.1 | 1.00E-49 | Yippee family putative zinc-binding protein |
| NR | AFK42973.1 | 5.29E-71 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9T096|YIPL6_ARATH | 3.00E-63 | Protein yippee-like At4g27745 |
| trEMBL | tr|I3SRT1|I3SRT1_LOTJA | 2.00E-71 | Protein yippee-like {ECO:0000256|RuleBase:RU110713} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03703 | 14272 | 17161 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003703s00043726.1 | PF03226.9 | Yippee-Mis18 | 10 | 102 | 8.00E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 27.417 |
| SRR1783600 | control | 27.279 |
| SRR1783602 | moderate drought stress | 23.085 |
| SRR1811619 | moderate drought stress | 22.548 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 52.117 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 50.557 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 27.154 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 27.077 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 66.578 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 66.733 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.841 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.242 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 99.679 |
| SRR2868004 | Drought Stress (root) | 144.889 |
| SRR2967015 | Control (root) | 147.787 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 48.830 |
| SRR9715740 | Leaf | 38.511 |
| SRR9715741 | Leaf | 54.149 |
| SRR9715739 | Root | 33.742 |
| SRR9715742 | Root | 40.726 |
| SRR9715743 | Root | 42.493 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 148.019 |
| SRR8749028 | MeJA induced 9h | 150.162 |
| SRR8749029 | MeJA induced 9h | 287.889 |
| SRR8749030 | Uninduced | 251.953 |
| SRR8749031 | Uninduced | 381.449 |
| SRR8749032 | Uninduced | 270.929 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 67.470 |
| SRR8400027 | Control - Root | 73.627 |