Gene detail

Gene detail information of Glyur003703s00043725

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G61850.1	9.00E-38	Dof-type zinc finger DNA-binding family protein
NR	NP_001236777.1	1.46E-95	Dof21 [Glycine max]
Swissprot	tr\|Q43385\|DOF37_ARATH	6.00E-48	Dof zinc finger protein DOF3.7
trEMBL	tr\|Q0GLD1\|Q0GLD1_SOYBN	5.00E-96	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G41170.1}

Sequence

Transcript Sequence

>Glyur003703s00043725.1
GCACCACCACTACTACTATATCCCAACTCTCAAAGCAAAGCCCTTTACACACACTTGCTTTTCACTCTCTCCCTCTAGAAAAAAGTGGGTGTGTTTTTCTTTCCTCTGAGGACTCAATAGCTTTCCCCTTTTTAATTTCCCATTTTCTTCCTTAAATCCATGGACACAACTCAGTGGGCACAGGGGATTGGAGTGGTTAAGCATCATCATCCCATGGAAGGTACNTCAAATTCAAAGGCTAATAACAATCAAGTGTTGGAGAGGAGGGCAAGGCCACAGAAAGATCAAGCCTTGAACTGTCCAAGGTGCAATTCAACCAACACAAAATTCTGCTACTACAACAACTACAGCCTCTCACAACCAAGGTACTTTTGCAAGACTTGTAGAAGGTATTGGACTGAAGGTGGGTCCTTGAGAAATGTTCCTGTTGGTGGTGGTTCAAGGAAGAACAAGAGATCCACACCATCATCATCCACTACTACTACTACTACTACCCCATCAACAACAACATCATCATCACAACAAGAAGCTTCAAAGAATAAGCTTCTTCACCCTGATCTAATCACAACAACAACACCAACACCAAATATTAATACTTTCCCTCATATTCATCAATCTTCTTCTCATCAAAACCCCAAGATCCAATATCAAGGCCAAGATCTTAACCTAGCATACCCACCACCACCTGATCATCAAGACTATAACCACCTTCAAACTTCTGCTATGGAGCTTCTCAAAACTGGGATAAGTACTTCCTCTTCCTCAACAAGGGGTTTGAATTATTCTAATTTCATGCCACCTACCATGTCCTTATCAGAGTCAAGTCCAATGTATAATAACAATAACAATAGTTCAACTATTGGTGGGTTTCCTCCTTTGCAAGATTTTAAGGCTCATCAAGGACTAAGCTTTAGCCTTGAGGGGTTTGAAAATGGAGGCTTTGGGAGTAGTACTCTACATGGAATTCATCAAGAGAATGGTGGTGCAAGGATCTTGTTTCCTGTAGTGGAGGATTTGAAGCAGCAGGTTCCAAACAGTACTACTACTACTGCTAGTCAAGGAGATTCTTCAACTCATCATGGGTATTGGAATGGCATGTTAGGTGGAGGANCATGGTAGATAATAATATTCGGAGAAAAGTGAAAAAGAAAAAAAAAAGTGATGAAGAAAAAGCAAATGAAGAAAAGGTGAACAAGGGGTTGTGGTTGGTGCTTTTGCCTTCTTAGACTCTTTTTTTCTTCTTTATTTATTTACCCTTTTTTTCTTCTCTTTTTTCATTTTGGTAATCTGGGGGAGTGGCTGTGTTTGGACTTTGAAGTGATCATGATCAGAAACCACTAACAAAATAGGGTACATATGGCTTTAATTTCTGTTTTGTTTCTGTTTAATTAATCTCCATTTTAATTTTAATTTTTGGTCTCTTCTACTAATTTCCTTTATTATCTTNTTATAGTCCTGCTTAATTTGATTTTTTTTTTTGGGTTTATGAATGTGGCTGCAATTTGAAGCTACCTATTTTCATTTTAGGTTTTAAGATTTATCAGGAGTTCCGAATCCATNATATATATCTCTTAACTAATTTTTGGCATTTTTTCCCGTCACAAGTTTTTTTTTTGTTCTTTGCTTGGGAGATAAAGGTTTTACCAGGATAATCGCGCACGGTTTGCTGCCACCACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03703	4896	7159	+

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-Dof

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003703s00043725.1	PF02701.10	zf-Dof	41	100	4.90E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.749
SRR1783600	control	16.938
SRR1783602	moderate drought stress	18.097
SRR1811619	moderate drought stress	18.411

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.258
DRR006520	Root Summer glycyrrhizin high producing strain	29.270
DRR006521	Root Winter glycyrrhizin high producing strain	62.898
DRR006522	Root Winter glycyrrhizin high producing strain	60.445
DRR006523	Root Summer glycyrrhizin low producing strain	31.107
DRR006524	Root Summer glycyrrhizin low producing strain	31.235
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.403
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.385

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.818
SRR2868004	Drought Stress (root)	18.223
SRR2967015	Control (root)	21.735

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.697
SRR9715740	Leaf	2.630
SRR9715741	Leaf	1.461
SRR9715739	Root	1.797
SRR9715742	Root	4.741
SRR9715743	Root	4.336

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.050
SRR8749028	MeJA induced 9h	5.893
SRR8749029	MeJA induced 9h	20.329
SRR8749030	Uninduced	3.303
SRR8749031	Uninduced	1.049
SRR8749032	Uninduced	4.033

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.328
SRR8400027	Control - Root	20.410