Gene detail

Gene detail information of Glyur003698s00040368.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G48740.1	0	Leucine-rich repeat protein kinase family protein
NR	AES79129.2	0	LRR receptor-like kinase [Medicago truncatula]
COG	YP_525172.1	2.00E-11	serine/threonine protein kinase with Chase2 sensor [Albidiferax ferrireducens T118]
Swissprot	tr\|C0LGV0\|Y5487_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At5g48740 (Precursor)
trEMBL	tr\|G7L173\|G7L173_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:AES79129.2}

Sequence

Transcript Sequence

>Glyur003698s00040368.1
ATGGAATTTCATGAAACAGGTTTCTTGAGTCTCTCGTGTGGTGGAACAACCAGCTTCAGTGATTCATCTAACATCTCATGGGTACCAGACACTCCTTACATAACCACAGGCAAGACAACCACCATCAATTACAGTGATGGTTCCTTCTCAACAAATGTCTCAGCTCGGTTCTTCCTCAATTCGGGAGGCCGTGCGTGCTATAGGATACCGGTGAACAATGCAACTAGTTTGGTTCTTNTGAGGGCAAAATTTGTGTACAAGAACTATGATGGACTTGGAAAACCACCTACTTTCTATGTTTCTCTTGGGACAGCTATTGCTGCTAAGATAAATCTTGATAAAANTGATCCTTGGACAGAAGAGTTTCTTTGGGAAGTCAACAAGGATACACTGGTATTCTGTTTAAATTCAATTCCAAGTGGTGGTTCTCCTGTAATCTCTTCACTTGAAATCAGACCACTTCCTAAAGGGTCCTACACAAATGGCAAAGCAGATTTCCCAAATAAGTTACTTAGGATGAGTTATCGAATTGATTGTGGCCACATCAATGAGTCCATACAAAGTTTCACACCTTTTCATCCTACAACTGGATTTAAGATTCAGAACAGCTTCAATCGATCCAATATTGTGGAGGAACCACCGGCTGCTGTTCTTCAAACCGCGAGAGTCTTGGCGCGACAAAATATGCTGACATATAACCTCCCTCTTGATGGATTAGGGGACTACTACATTATCCTCTATTTTGCTGGAATTCTTCCTGTGTTCCCCTCATTTGATGTATTCATAAATGGAGATATTGTAAAATCAAACTACACAATAAAGAGTTCAGAAATCAGTGCTTTATATGTTACAAGAAAGGGGATCGGCAGCTTGAATATAACACTAAGGAGTATCAGCTTCTACCCTCAGATCAATGCATTTGAGGTATATAATATGGTTGATATTCCATCTGAAGCCTCCTCCACCACAGACATAAATTTGAGATCAATTAGTCCTACATTTGGTGACTTGTTGGACCTTAAAGCATTGGATTTGCACAACACATCACTTACAGGTGAAATTCAGAATTTGGGAAGCTTGCAACATCTTGAAAAACTGAACCTTAGTTTCAATCAGCTAACATCCTTTGGTGTAGAGCTCGAGAACTTGATTAGCCTTCAAATATTGAATCTGAAAAACAACAAACTTCAAGGNCCACTTCCGCAGTCTTTGAACAAAGACACTTTAGAGATCAGAATATCTGGAAATCTGTGCCTGACTTTTTCCACAACCATATGTGATGATGCATCAAACAATCCTCCAATTGAGACACCACAAGTGACTATAGTTCCCCAAAAGAAGCACAAAGGACAAAACCATCTAGCATTAATACTTGGCACAGTTGGAGGAGCTTCACTTGCCCTTGTCTTGATATGTCTTTCAGTATTTATATACATTGCTAAAACAAGACATGAAACCTCACACACAACGAGGGAAGAGACAGATATGAGGAACTGGGGTGCAGAAAAAGTTTTTTCCTACAAAGAAATCAAAGCAGCTACAAGCAATTTTAAGCAAGTCCTAGGAAGGGGAAGTTTTGGATCTGTTTACCTTGGAAGGCTTCCAAATGGGAGATCAGTTGCTGTCAAAGTTCGGTTTGATAAATCCCAACTTGGGGTTGATTCTTTTATCAATGAGATTCATCTCTTGTCGAAAATCCGCCACCAAAATCTTGTGTCTTTGGAAGGATTTTGTCATGAATCAAAGCATCAGATATTAGTATATGAATACTTGCCTGGTGGATCCTTGGCTGATCACCTCTATGGTGCAAACAGCCATAAAACTCCCTTGAGCTGGGTTCGAAGGTTGAAAATTGCAGTTGATGCAGCAAAAGTAACCCAAGCAGATGCAACTCATGTCACCACTGTTGTCAAGGGAACTGCTGGGTATCTAGATCCAGAGTACTATTCCACCCAACAGCTTACAGAGAAAAGTGATGTATATAGCTTTGGAGTAGTTCTTTTGGAACTCATTTGTGGAAGGGAACCATTGATCCACTCTGGGAGTCCTGACTCATTCAATTTGGTGTTATGGGTAAGCCAGAGTTCCTTCAATTGTGTCCACCACGCAATAGCTTGAAAANTTTTCCTCAAGCATCACATATTTGATAGGAATGACAATTGCCACNCACATCAAGAGGTCTTCAAAATGGTTGTAGTGGGGCTTAGTTTAAGGTGGATATTTTTAGGTTCTAAGTTCACTTTACTGGAGTTAAAAGATGCACTCTAACTATTCTCAATATTTCCTGTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03698	512	8670	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.8.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003698s00040368.1	PF12819.2	Malectin_like	11	312	1.70E-48
Glyur003698s00040368.1	PF00560.28	LRR_1	362	383	0.064
Glyur003698s00040368.1	PF00560.28	LRR_1	385	404	1.2
Glyur003698s00040368.1	PF07714.12	Pkinase_Tyr	517	624	8.60E-17
Glyur003698s00040368.1	PF00069.20	Pkinase	630	685	1.40E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.309
SRR1783600	control	0.359
SRR1783602	moderate drought stress	0.237
SRR1811619	moderate drought stress	0.257

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.929
DRR006520	Root Summer glycyrrhizin high producing strain	2.089
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.811
DRR006524	Root Summer glycyrrhizin low producing strain	0.745
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.484
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.663

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.416
SRR2868004	Drought Stress (root)	1.806
SRR2967015	Control (root)	2.680

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.204
SRR9715740	Leaf	0.066
SRR9715741	Leaf	0.199
SRR9715739	Root	0.041
SRR9715742	Root	0.470
SRR9715743	Root	0.601

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.021
SRR8749028	MeJA induced 9h	0.039
SRR8749029	MeJA induced 9h	0.041
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.021
SRR8400027	Control - Root	1.929