Gene detail

Gene detail information of Glyur003692s00043982

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G05642.1	5.00E-07	Nucleic acid-binding, OB-fold-like protein
NR	XP_003597587.1	7.97E-39	hypothetical protein MTR_2g099880 [Medicago truncatula]
trEMBL	tr\|Q2HVD7\|Q2HVD7_MEDTR	2.00E-33	Nucleic acid-binding, OB-fold, subgroup {ECO:0000313\|EMBL:ABD28510.2}

Sequence

Transcript Sequence

>Glyur003692s00043982.1
ATGGCTGCTCAACATGATTTTGTGGCTTCAATCACCGCTGGAAGGGAGACTTGGAACATTGTTAGCAAGGCTGGGGATAAGATCCATGCTTCTATTCGCAGGGCTCTGATGTATAGGTTTGAGAAAGATTTGCATGAGGGTTCAGTTTATCATCTGTCTTTGTTTGAGGTGGTCCGTAGTAGCAAAAATTTCAAGACAACAAAGCATGGCTATAAGATTAATTTTATGTATAATACTAAGCTTACTGAAGTGGATGTTGGGATGGTTTCTAGATGTCCTTATTCCTTAGTCAGTTTGGCAGACATTTTGGGGAATTTTAACAGTGATTATTTGGTTGATTTCATGGGTTTTTTAACTGGCATTTGTACTGAAAGAGAGTATGAGAGGGATGGCAATGTCACCAAGATGAATATAATAGAATTGGAGGCTGATGGGTGTTGTGCGAATAATGAGTCCCCTACCCAACTGAGTCCGTTAAAAGAGTCCAGTAAAATTAGCGTGGAAGAAGATTTCCTTACATTGACCCCTCGAAAGACCCTTAGAGAATTGAAGAGCTATAATGAGGCTTTTGAAGATTTACCCTTGTCAAAGGAAATTGCAGAGCTTGTGGGTAAAACATTTCTGTTCAAAGTTGAGATGAAGAATTGTTACTGCAAGACTGTGTGCGCAGATCCTGCTGTTATCCAGAAATTCATTGAAACTTCAAATGAAATGGAAAATAATGCTGCTGGTAATGAATTGGTGGGAGGTGTTGTGCAGAATTTACTGCCTCAATTTTTTGATAATGTAAATGACAAAGAATCTCATGTTGATGTGGTTGGAATGGATTTTATTCCTGCATCTCTTGACTATTCTGCTTTAGAGAATCTCAGCCAGATGATTTCTACTGAAGATGAGGGCAATATGGGTAAAATTGCAGATGTTGTTCCTGATAATCAACCCACTGTTGCTGATTTCAATTCTCAGGATTCAACTAATGAATCTATAGAGGTGACTCCTGTGAAGAGGCACCATGGAGTTATGGAAGATGTGGAAGATGGAGCAAGCTGCAAGGTCATGAAGACATCTATCAAAGTTGAAAAAGATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03692	12870	15488	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003692s00043982.1	PF02721.9	DUF223	20	96	1.70E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.373
SRR1783600	control	0.461
SRR1783602	moderate drought stress	0.723
SRR1811619	moderate drought stress	0.684

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.465
DRR006520	Root Summer glycyrrhizin high producing strain	6.314
DRR006521	Root Winter glycyrrhizin high producing strain	4.199
DRR006522	Root Winter glycyrrhizin high producing strain	4.298
DRR006523	Root Summer glycyrrhizin low producing strain	5.417
DRR006524	Root Summer glycyrrhizin low producing strain	6.464
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.339
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.608

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.756
SRR2868004	Drought Stress (root)	0.141
SRR2967015	Control (root)	0.110

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.744
SRR9715740	Leaf	3.454
SRR9715741	Leaf	0.075
SRR9715739	Root	1.534
SRR9715742	Root	0.230
SRR9715743	Root	0.150

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.040
SRR8749028	MeJA induced 9h	0.077
SRR8749029	MeJA induced 9h	0.013
SRR8749030	Uninduced	0.024
SRR8749031	Uninduced	0.017
SRR8749032	Uninduced	0.025

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.219
SRR8400027	Control - Root	0.318