Gene detail information of Glyur003686s00042131 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G49240.1 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_006581642.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g49240-like [Glycine max] |
| Swissprot | tr|Q9M3A8|PP273_ARATH | 0 | Pentatricopeptide repeat-containing protein At3g49240 |
| trEMBL | tr|I1KAS7|I1KAS7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G13430.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03686 | 13102 | 16104 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003686s00042131.1 | PF01535.15 | PPR | 210 | 239 | 0.092 |
| Glyur003686s00042131.1 | PF01535.15 | PPR | 281 | 310 | 0.099 |
| Glyur003686s00042131.1 | PF01535.15 | PPR | 319 | 345 | 3.80E-08 |
| Glyur003686s00042131.1 | PF13041.1 | PPR_2 | 358 | 403 | 3.00E-12 |
| Glyur003686s00042131.1 | PF01535.15 | PPR | 427 | 457 | 0.039 |
| Glyur003686s00042131.1 | PF13041.1 | PPR_2 | 459 | 506 | 7.60E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.497 |
| SRR1783600 | control | 16.776 |
| SRR1783602 | moderate drought stress | 18.967 |
| SRR1811619 | moderate drought stress | 18.984 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.841 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.778 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 29.609 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 28.681 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 32.758 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 31.819 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 23.831 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.578 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 33.316 |
| SRR2868004 | Drought Stress (root) | 29.386 |
| SRR2967015 | Control (root) | 28.898 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.746 |
| SRR9715740 | Leaf | 26.850 |
| SRR9715741 | Leaf | 10.865 |
| SRR9715739 | Root | 24.616 |
| SRR9715742 | Root | 23.706 |
| SRR9715743 | Root | 22.998 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 93.412 |
| SRR8749028 | MeJA induced 9h | 72.654 |
| SRR8749029 | MeJA induced 9h | 78.900 |
| SRR8749030 | Uninduced | 20.920 |
| SRR8749031 | Uninduced | 24.965 |
| SRR8749032 | Uninduced | 25.879 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 27.538 |
| SRR8400027 | Control - Root | 24.524 |