Gene detail information of Glyur003680s00047799.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G21910.1 | 7.00E-27 | Integrase-type DNA-binding superfamily protein |
| NR | NP_001239623.1 | 1.97E-79 | ethylene-responsive transcription factor ERF012-like [Glycine max] |
| Swissprot | tr|Q9SFE4|ERF12_ARATH | 2.00E-46 | Ethylene-responsive transcription factor ERF012 |
| trEMBL | tr|C9WA62|C9WA62_SOYBN | 7.00E-80 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G22970.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03680 | 10894 | 11634 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ERF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003680s00047799.1 | PF00847.15 | AP2 | 34 | 84 | 7.80E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.760 |
| SRR1783600 | control | 5.382 |
| SRR1783602 | moderate drought stress | 4.636 |
| SRR1811619 | moderate drought stress | 4.561 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 95.055 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 92.678 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.301 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.622 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 166.525 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 157.745 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.227 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.058 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.311 |
| SRR2868004 | Drought Stress (root) | 11.180 |
| SRR2967015 | Control (root) | 14.088 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.696 |
| SRR9715740 | Leaf | 7.495 |
| SRR9715741 | Leaf | 4.314 |
| SRR9715739 | Root | 57.547 |
| SRR9715742 | Root | 28.166 |
| SRR9715743 | Root | 32.773 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 140.974 |
| SRR8749028 | MeJA induced 9h | 35.347 |
| SRR8749029 | MeJA induced 9h | 67.569 |
| SRR8749030 | Uninduced | 67.834 |
| SRR8749031 | Uninduced | 3.714 |
| SRR8749032 | Uninduced | 8.587 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.474 |
| SRR8400027 | Control - Root | 13.777 |