Gene detail

Gene detail information of Glyur003679s00044507

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47610.1	3.00E-117	transcription regulators;zinc ion binding
NR	KHN18549.1	0	Activating signal cointegrator 1 [Glycine soja]
trEMBL	tr\|V7CDE8\|V7CDE8_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW27310.1}

Sequence

Transcript Sequence

>Glyur003679s00044507.1
ATGGAATCGGCGGGGGAGTGGCTGGAGAACGCGCTGGTGGAGTTGTGCTCGAAGATCGAGACAGGTTTGGGTTTGGGTTTGGATGAAGAGATAATCAAAGGGCTTGTTTCTTACTGCGACCTTGCTGAGCCACGAGATGCTAAAGAGTACCTTGACAATATAATCGGTCAGGAAGCAGGGAAAACTGTGATTGAAGAATATTTAAGACGGAGAGGTTNCTCAGAATTCAGCACCAACTCAGATGTTCCAACTACCAAATTACATGCCTATGTCAAACCACCTTCGGTTGAGNCATCTGCAAGTGGAACTAAGAAATCGTTGAGAACACCAAAATCGGTGACTGTCNGCAGTAGCCATGCAGAACCCAACAAGAATGCTGTTAGCAGTAATCGGGAAAATCAGATTCCAAGTACAGGTAGTGAATCAAGAACATCACAAAAAGGAAATCAAGTGAGTTCCAAAAAGAAGAAAGCTGGGAAAGCTATTTCACTTGCTGATGTGGCCAAAGGTTCGATTGTGTTCCAGCAGGGAAGACCATGCTCTTGTCAAGCACGTTGTCACAGGCTGATCAGCAATTGCTTATCTTGTGGTAAAATAGTTTGTGAACAAGAAGGAGAGGGACCTTGCCAATTTTGTGGTGCACTTGTGTTGAAAGAGGGAAGCTCATATGCTGGTCTGGATGAAATTTTGCCTCCCTTGTCAGATGCTGAGGCTGCTGCTGAAGCATACGCAAAGAGGCTTGTCGAATATGACCGAAACTCTGCAGCTCGTACAACAGTTATTGATGACCAAAGTGACTACTATGAGATTGATGGAAACAGTTGGTTGTCAAAGGAGGAAAAAGAACTGTTGAAGAAGAAACAAGAGGAGATGGAAGAAGCTGAGCNAGCCAAACGGAATAAAGTTGTCGTGACTTTTGATCTAGTTGGCCGCAAGGTCCTTCTGAATGAAGATGAAGTTTCAGAATTACAGTCTGACAATAGAATACTACGTCCACCTGATGAAAGGGAAGTGAACCGCATTAAACCAAACCCAACTCTTAAGATTCAGCCAGTTTTTGTGGACCTGGGCTTCAGTAAGAAGTCTGCTAAAGATAGGCAATCAAACAAAGGCCTAGGCAAAGGAGTGTGCTTGGAGATTACTGGGAGGGTGCAGCATGATAGCAAGGACTTGAAGTATTTTATGATGGAAAGCCAATTGGCAACAGCTTCAAATGAAAAATTGTGGCAAGTGCCTTCAGGAAATGGAGGACTGCACGTTGAAGATGATGGTGAATGCTTACTGAACAATGATAATGAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03679	5680	8245	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function
GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003679s00044507.1	PF06221.8	zf-C2HC5	177	219	1.00E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.566
SRR1783600	control	6.429
SRR1783602	moderate drought stress	6.604
SRR1811619	moderate drought stress	6.552

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.606
DRR006520	Root Summer glycyrrhizin high producing strain	20.579
DRR006521	Root Winter glycyrrhizin high producing strain	24.233
DRR006522	Root Winter glycyrrhizin high producing strain	23.532
DRR006523	Root Summer glycyrrhizin low producing strain	18.812
DRR006524	Root Summer glycyrrhizin low producing strain	19.269
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.611
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.634

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.702
SRR2868004	Drought Stress (root)	19.901
SRR2967015	Control (root)	21.284

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.865
SRR9715740	Leaf	20.079
SRR9715741	Leaf	19.884
SRR9715739	Root	1.747
SRR9715742	Root	12.811
SRR9715743	Root	10.687

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.991
SRR8749028	MeJA induced 9h	7.079
SRR8749029	MeJA induced 9h	5.216
SRR8749030	Uninduced	3.075
SRR8749031	Uninduced	1.009
SRR8749032	Uninduced	1.098

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.124
SRR8400027	Control - Root	18.576