Gene detail

Gene detail information of Glyur003665s00039308.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G06240.1	4.00E-15	F-box family protein
NR	XP_003619473.1	2.86E-103	F-box/kelch-repeat protein [Medicago truncatula]
Swissprot	tr\|Q8GXC7\|FBK50_ARATH	2.00E-18	F-box/kelch-repeat protein At3g06240
trEMBL	tr\|G7KLX9\|G7KLX9_MEDTR	1.00E-103	F-box protein interaction domain protein {ECO:0000313\|EMBL:AES75691.1}

Sequence

Transcript Sequence

>Glyur003665s00039308.1
ATGATCCTCCCAAACGAACTCTACCTCGAAATCCTATCATTTCTTAGCGTGAAAACCCTCACGCGACTGAGGAGCGTGAGCAAGTCATGGAACACCCTCATCTCCGACTCTACCTTTGTGAAAATGCACCTTAAGAGATCTCCACGAAACCCGCACCTCGCAGTACTAATGTGGAGGTCCACTTACGGTTCAGATGTTATCGCAGCCCTCCCCGTGCGTCGTTTACTCAAGAACCGGTCGATCACCATTATGGACAACTACACTGTTTGCTACCGTTACAATAGCTCCGGNTTCAAAGTCGTTGGTTCCTGCAACGGATTGGTCTGCCTACTTCTCTATTGCATCAACAAGACCTGCACGGATCGGCTCTGTTTCTGGAACCCGGCCANGAAGACAAGATCTGAAAAAACATTAGAGAAGGTTTTTTACAGTGACGGTTTCAGATTAGCATTTGGTTACGATAATTCGAAGGGAACTTATAAGGTTGTGGTGTTCCGTGTGTTTAAGGATGTGGACTACAACAACCACGGTCAATGGACAAGTGATGTCAGAGTTTTCAATTTGGTTGATAATTCTTCTTGGAGAAATATTCANAGTTTCCCTGCTGTTCCTCTTAACCATTTGGATCGTCGCAATGATGACCTTTCGAATGATGGTGTGCATTTGAGTGGCACTCTTAACTGGTTGGCCCTTCGCAACACATGGTCTTCATTAGAAACTTGGAATGATCGTGTTTCTGTTGAGCAATTTGTGATTGTTTCNCTTGATCTCTCCACGGAGACGTACACAGAGTTGCTGCTGCCTCGGGGTTTCAATGAGTTGCCTCGGGGTTTTGAAGATCAGTTGCGTCCTGTTCAGCCAACTATTATTCATGTTTTGATGGATTGTCTTTGCTTTTGTCATGATTCCAAGGGAACCGAATTTGTCATATGGCAGATGAAGGAGTTTGGAGTTCGAGAGTCTTGGACTCAATTACTTAAAGTTTGTTACCAGAATCTTCAATTAATGAACTACNATGCAATTGATTTCCAAGTATTGCCATTGTGCCTTTCTGAAAATGGTGATACTGTGATATTGAAAGTGGCAAACACGAGAGTTATCTATAATTGGAGAGTTAACAAAGTAGGGAGAGCTAGAATTTTAAATGGACGCCAGATGACAGATGCCAAGGATTTCATAGAAAGCTTGATGAAGGAGTTTGGAGTTCGAGAGTCTTGGACTCAATTACTTAAAGTTTGTTACCAGAATCTTCAATTAATGAACTACGATGCAATTGAATTCCAAGTATTGCCATTGTGCCTCTCTGAAAATGGTGATACTGTGATATTGAAAGTGGCAAATCAGGGATATTTCAATTATTGGAGAGTTAACAGAGTAGAGGGTCGAGCTAGAATTTTAAATGGATGCCAGAGGATTTTCGAAGGCAAGGACTACATACAAAGCTTGGTTTCTCCTCCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03665	18930	20635	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003665s00039308.1	PF00646.28	F-box	3	38	2.10E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.828
SRR1783600	control	0.926
SRR1783602	moderate drought stress	1.411
SRR1811619	moderate drought stress	1.394

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.822
DRR006520	Root Summer glycyrrhizin high producing strain	0.871
DRR006521	Root Winter glycyrrhizin high producing strain	0.076
DRR006522	Root Winter glycyrrhizin high producing strain	0.269
DRR006523	Root Summer glycyrrhizin low producing strain	0.453
DRR006524	Root Summer glycyrrhizin low producing strain	0.302
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.254
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.190

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.401
SRR2868004	Drought Stress (root)	1.961
SRR2967015	Control (root)	2.340

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.030
SRR9715740	Leaf	0.610
SRR9715741	Leaf	0.479
SRR9715739	Root	3.355
SRR9715742	Root	4.820
SRR9715743	Root	4.609

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.605
SRR8749028	MeJA induced 9h	5.074
SRR8749029	MeJA induced 9h	2.892
SRR8749030	Uninduced	7.982
SRR8749031	Uninduced	4.209
SRR8749032	Uninduced	1.928

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.763
SRR8400027	Control - Root	3.980