Gene detail

Gene detail information of Glyur003665s00039307

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G28706.4	3.00E-95	pfkB-like carbohydrate kinase family protein
NR	KEH42440.1	1.14E-172	pfkB family carbohydrate kinase [Medicago truncatula]
COG	YP_995597.1	2.00E-08	ribokinase-like domain-containing protein [Verminephrobacter eiseniae EF01-2]
trEMBL	tr\|A0A072VWJ0\|A0A072VWJ0_MEDTR	4.00E-173	PfkB family carbohydrate kinase {ECO:0000313\|EMBL:KEH42440.1}

Sequence

Transcript Sequence

>Glyur003665s00039307.1
GCAGAAACAAAACTAGCTATTGCCCAAGCACAGTCAATTGATATGTCTTCCAATTCCACTGCTCTTCCTCACCCAGAAAATCCCGTCATTGTGGGATTTGGTGGGGTTGGCGTAGATCTTTTGGCAACAGTGCCATCGTTTCCGATGCCAGACACCAAGAACAGAACCACTCAACTCCAGGTTGCAAATGACGCTCAGGGTAGGACTTTGCTGGAGGAGCTACAAGCTGAAGGGGTGGATACTTCTTCCTTTGTGACACGCACATGTATATTTACAGAAGGGTATCCTCCAATGGTACCAGAAGATCTTTCACGAGCCAGATTGTTATCAGCATTGGATGGAGCTAGAGTGGTTTATTTTGATGCAAGGATGCCTGAAACTGCTCTTCTCATTGCTCAAGAGGCATTTCATCAGAATATACCTATCTTAGTTGATGCTGAAAGGCCAAGGGAAGGATTGAATGACCTCCTGGACATGGCTGATTATGTTGCCTGGACAGAGGCATCCTCCATTCCAAGAGCACTAGTTTCAATTCTTTTAAGGCTGCCAAGGCTTAAATTTGTGATTGCAACTTTGGGAAAAGATGGCTGCATAATGCTTGAGAAATGTGTAGATGGTAAACTGAGTTATGCAATTTACTTTCTAGCAGAGGGTTCTCACTTAGAAGAAATGGATGTGGACAGCTCTTTAAAATCATTAACAATGAGAAGGGATGATAGCATAGCCATGCCAACCTGCATTGCCTCGTCTGTTACAAAATTTAGAGCAGAAGGGATAGGATCANTGTGTGGGAGGTTATATTTTGGGACATGTGAAAAGATTCCACCATCAGAGCTTGTTGATACAACTGGTGCTGGGGATGCATTTGTTGGAGCTGTTTTATATGCGGTCTGTGCCAACTTCTCACCAGAGAAAATGTTGCCATTTGCTTCTCATGTGGCAGGGGCCAAATGTAGAGCTCCTGGAGCTAGGAGTGGTCTTCCATATCGCACTGATCCAAGCCTGGCATCCTTTACTGAGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03665	9108	18265	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016773 phosphotransferase activity, alcohol group as acceptor

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003665s00039307.1	PF00294.19	PfkB	271	328	1.20E-13
Glyur003665s00039307.2	PF00294.19	PfkB	262	319	1.10E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.535
SRR1783600	control	8.013
SRR1783602	moderate drought stress	8.547
SRR1811619	moderate drought stress	7.690

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.105
DRR006520	Root Summer glycyrrhizin high producing strain	8.011
DRR006521	Root Winter glycyrrhizin high producing strain	1.156
DRR006522	Root Winter glycyrrhizin high producing strain	1.237
DRR006523	Root Summer glycyrrhizin low producing strain	8.806
DRR006524	Root Summer glycyrrhizin low producing strain	10.245
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.501
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.278

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.633
SRR2868004	Drought Stress (root)	15.994
SRR2967015	Control (root)	14.756

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.132
SRR9715740	Leaf	3.600
SRR9715741	Leaf	5.768
SRR9715739	Root	15.266
SRR9715742	Root	15.425
SRR9715743	Root	17.279

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.636
SRR8749028	MeJA induced 9h	0.986
SRR8749029	MeJA induced 9h	0.632
SRR8749030	Uninduced	1.555
SRR8749031	Uninduced	0.322
SRR8749032	Uninduced	0.675

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	32.567
SRR8400027	Control - Root	31.992