Gene detail

Gene detail information of Glyur003662s00040195

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G32720.1	1.00E-117	La protein 1
NR	XP_003526475.1	0	PREDICTED: lupus La protein homolog A-like [Glycine max]
Swissprot	tr\|Q93ZV7\|LA1_ARATH	3.00E-145	La protein 1
trEMBL	tr\|I1K995\|I1K995_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G08650.1}

Sequence

Transcript Sequence

>Glyur003662s00040195.1
ATTGGAGTTTCGACCGCGAATNGAAGAAGGGTTCACCAGTTTGACCAAAACCCTAGACAGACATTCACATTTCACACACACACACTCTCCCCCTCAGTGGTCCTGCGTTCATCAATGGCGACGCCGTCGTTGGACGAAGAAACAGCTAAGAAAGTGATACGACAAGTGGAGTTCTACTTCAGTGATAGCAACCTTCCCAAGGACGGTTTTTTGAGGAAAACTGTCGCCGAAAGCGAAGATGGCATGGTTAGTTTGGCGTTGATTTGTTCTTTCAATCGAATGCGAACGCACCTTAATTTGGGGGATGTAAAGCCCGATGAAGTCACCCAAGATACTGTTAATGCTGTTGCGCAAGCTTTGAGAAATTCGGCTTCACTCAAGGTCTCCGAAGATGGGAAAAAAGTTGGCAGGACAACTGAACTTCCAAAGCCAGAAGAGGTGATTGAGCAGGTGGATATAAGTACACTTGCTGCATCACCATTTGAATATGATCTGAAGCTTGAAGATGTGGAGGCATTCTTTGGTCAATATGCCAAGGTCAATAGTGTTCGGCTTCCCCGTCATGTTGGAGACAAAAATTTCTTCTGTGGCACTGCCCTGATTGAATTGTCATCAGAGGAAGAAGTAGAAAAAGTTATGAAGCAAAAACTGGTCTATGCGGGGGTTGAATTAGATTTGAAACCAAAGAAGGACTTTGATGCAGAGAGGGATAAAGAATTAGAAGATTATGAAAAATCCCATCCACCTATGGGTTCAAATCATGAAAATACCTCAGATGCAGAAGAAAACTACCCAAAAGGCTTAATTATTGCCTTCAAACTAAAGAGCAATTCAGATGAAGTTCCTTCAGAACAAAANGGTGTTGATCAACAAGCCAATGACAATGTCTCCAAAACAGATGAAAACAATCTCTCCAAAATTACTGCTGGGGAAAGTGACCAAAAGGTATTAGAAAATGTTGACAATGATAGAGAAAACAATGAGATGAAAGAAGGAAACAAAATTGAAGGTGAAGAAAAGGGTCGTGAAACTGGTGAAAAAATTTCAGCTGCAGCTTACAGGGACAACATGGATGTTGTCATGCGTGAGGATTTGAAGGATGTCTTTGAGAAGTTTGGTAAAGTGAAGTACATTGATTTCAAGATTGGTGAAGAGTCAGGATATATCCGGTTTGAAGATACTGAAGCTGCTCAGAAAGCCCGTGCTGCTGCAGTTCTTTCAGAAAAGGGCGGCTTGGTTGTAAAGAATTATGTTGCTACTTTAGATCCAGTGACTGGTGAGGCCGAGAAAGAGTACTGGAGCCTGCTTCGGGATAATCGAGACAAGCACCGAGGATACAAGAGTAACCGAGGAAGGGGAGGAAGGCATGGTAGATGGGGCAAACATAAACGCTCTAGAGAGAATGTTTCTGCAGTAGATCGCCCAAATAAAACCCAGAAAGTTGGTGCTGCATAATGTCAGCAGTTTTGAGATCAACTAGTAAGGTATCGAGATATTTTAGGTGAACCAGATTACTGCTTGGTCTCCTGATGTATTCTCAGCTATTCAAGTTTTTGATTTTATGGTTCGTTGTAATATATTACATTATCATTATCATTCCGTTGCAACGTCTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03662	1846	6031	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006396 RNA processing

cellular_component

GO:0005634 nucleus

GO:0030529 intracellular ribonucleoprotein complex

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

GO:0003723 RNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003662s00040195.1	PF05383.12	La	14	85	4.20E-22
Glyur003662s00040195.1	PF14259.1	RRM_6	126	177	9.00E-08
Glyur003662s00040195.1	PF08777.6	RRM_3	320	414	3.50E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.920
SRR1783600	control	15.222
SRR1783602	moderate drought stress	13.566
SRR1811619	moderate drought stress	13.700

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.735
DRR006520	Root Summer glycyrrhizin high producing strain	28.600
DRR006521	Root Winter glycyrrhizin high producing strain	15.832
DRR006522	Root Winter glycyrrhizin high producing strain	15.412
DRR006523	Root Summer glycyrrhizin low producing strain	18.136
DRR006524	Root Summer glycyrrhizin low producing strain	18.200
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.354
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.145

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.736
SRR2868004	Drought Stress (root)	30.290
SRR2967015	Control (root)	28.555

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.700
SRR9715740	Leaf	10.551
SRR9715741	Leaf	12.109
SRR9715739	Root	2.276
SRR9715742	Root	13.022
SRR9715743	Root	10.117

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	56.413
SRR8749028	MeJA induced 9h	35.944
SRR8749029	MeJA induced 9h	34.269
SRR8749030	Uninduced	12.645
SRR8749031	Uninduced	6.569
SRR8749032	Uninduced	7.637

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.426
SRR8400027	Control - Root	23.272