Gene detail

Gene detail information of Glyur003661s00041723

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G16080.1	2.00E-41	carboxyesterase 17
NR	XP_003527517.1	0	PREDICTED: probable carboxylesterase 15-like [Glycine max]
COG	YP_005068995.1	7.00E-22	putative lipase [Arthrospira platensis NIES-39]
Swissprot	tr\|Q9LFR7\|CXE17_ARATH	2.00E-47	Probable carboxylesterase 17
trEMBL	tr\|I1KFJ1\|I1KFJ1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G46680.1}

Sequence

Transcript Sequence

>Glyur003661s00041723.1
ATGGTCCATGAGAAGAAGGTAGTGGCCGAGCTGTCCGGTTGGCTCAGAGTCTTCGAAGACGGTTCAGTGGAGCGGACATGGACCGGACCGCCAGAGGTCAAGTTCATGATTGAACCGGTCCCTCCACATGAACAATTCATCGACGGAGTTGCTACCCGTGACGTGACCGCCACAACCCATGACGGTTCCAGCCTTCGTGTCCGGCTCTACCTGCCAGAGAAAACCCACAAGGACACCCATAAGCTACCCATCCTCNTCCACTTCCAAGGGGGCGGGTTCTGCATCAGCGAACCGGACTGGTTCATGTACTACCAAGTCTACACCCGATTTGTCCGGTCCACCCGATCCATCTGCATCTCCCCGTTTCTCCGTTGTGCCCCGGAGCACCGCCTCCCTGCTGCCATCGATGACGGCTTCACGACGCTCCGATGGCTCCAATNGGTGGCNAGGGGAGAGTCGCATGAGCCATGGCTCAAGGAGCACGGGGATTTNAACCGGGTTTTCCTCATAGGAGATAGCTCNGGAGGAAACCTNGTNCANGAGGTGGCCTCNAGAGCCGGTTTAGTGGACCTGAGCCCAGTTCGTGTGGCTGGGGGAATTCCCATTCACCCGGGTTTTGTCCGGTTGAACCGGAGCCAGTCCGAGATGGAAATGCCCCAATCACCATTTCTAACGTTGGACATGTTGGACAAGTTCTTCAGCCTGGCACTCCCAATTGGGAGCAACAAGGACCACCCCATCACGTGTCCCATGGGAGCGGCAGCACCGCCGCTTGAGAGCGTGAAGCTGCCACCACTCCTCCTGTGCGTGGCGGAGATGGACCTTGTGAGGGACACAGAGATGGAGTACTATGAGGCAATGAAGAAGGCNAATAAAGAAGTGGAGCTGTTTGTGAGCGAAGGAATGACACACAGTTTCTATCTCAACAAGATTGCTGTGGATCTGGACCCCACTGTTAGTGCCCAAATGGATGCTCTCATTGAAAGGGTCAGAGACTTCATTCAGAAGCACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03661	6275	7288	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003661s00041723.1	PF07859.8	Abhydrolase_3	87	307	6.40E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.271
SRR1783600	control	1.295
SRR1783602	moderate drought stress	0.335
SRR1811619	moderate drought stress	0.440

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.121
DRR006520	Root Summer glycyrrhizin high producing strain	1.412
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	38.914
DRR006526	Leaf Summer glycyrrhizin high producing strain	41.322

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.792
SRR2868004	Drought Stress (root)	8.868
SRR2967015	Control (root)	15.800

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	251.965
SRR9715740	Leaf	182.771
SRR9715741	Leaf	212.436
SRR9715739	Root	3.659
SRR9715742	Root	28.568
SRR9715743	Root	23.728

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.064
SRR8749028	MeJA induced 9h	0.403
SRR8749029	MeJA induced 9h	0.034
SRR8749030	Uninduced	0.472
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.056

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.978
SRR8400027	Control - Root	6.860