Gene detail

Gene detail information of Glyur003654s00043429

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G11260.1	2.00E-41	sugar transporter 1
NR	XP_004516889.1	9.82E-76	PREDICTED: sugar carrier protein C-like [Cicer arietinum]
COG	YP_001304621.1	7.00E-06	sugar transporter [Parabacteroides distasonis ATCC 8503]
Swissprot	tr\|Q41144\|STC_RICCO	1.00E-48	Sugar carrier protein C
trEMBL	tr\|V7C5N0\|V7C5N0_PHAVU	5.00E-73	Uncharacterized protein {ECO:0000313\|EMBL:ESW25449.1}

Sequence

Transcript Sequence

>Glyur003654s00043429.1
ATGGAGGTTCCAACAGTGTATCCTGGCAAACTCACCTTTAGGGTGATTATCGCTTGCGTCATGGCTGCCAGTGGTGGAATGATCTTTGGTTATGATCATGGTGTTTCAGGTGGAGTGACTTCAATGGATTCCTTCCTGAAGCAGTTCTTTCCATCTGTTTATGAAAGGCAGTCTAACCTGAAGCCTTCTTCAAACCAATACTGNAAATTCAACAGTCAGATATTGACACTTTTCACATCTTCCCTGTATCTAAGTGCTCTCGTTGCGGGTCTTGGGGCATCCAACATAACCAGGATGCTGGGTAGGCGTGCAACTATGATCTTGGGTGGAATTTTCTTTGTCTTAGGCGCATTAATCAATGGATTAGCCATACACATCTGGATGCTTATTGCTGGGAGGCTGCAGTTCCAATCTATGTCTCAGAAATGGCCCCATATAAATACAGGGGAGCTCTAAACATGTGCTTCCAATTGTCAATAACTATAGGCATCTTTGTAGCCAATCTCTTCAACTACTACTTTGCCAAGATACTTCATGGTCANGGATGGCGCCTAAGCTTGGGTCTTGGTGCTGTCCCTGCTGTGATCTTTGTTGTTGGCACACTCTGCCTTCCTGACTCACCAAGCTCCCTTGTCGCGCGTGGCTGTCACGACGAAGCCAGAAAGGAGCTTGTGAAACTCCGCGGTACCGATGATGTTGAGGCGGAACTCAGAGACATTATTACTGCTAGCGAGGCCTTGGAGAATGTGAAACACCCTTGGAGAACCATGATGGAGAGAAAGTATAGGCCACAGCTTGTGTTTGCCATATGCATTCCCTTCTTCCAGCAATTCACTGGCTTGAATGTGATCACATTCTATGCTCCTATTTTGTTCAGAACAATTGGTTTTGGAAGCACAGCTTCTCTCATGTCTGCTGTCATCATTGGCAGCTTTAAGCCCATTTCAACCTTAGTTTCAATTCTTATTGTAGATAAATTTGGAAGACGTACCCTTTTCCTTGAGGGTGGTGCTCAAATGTTGATTTGCCAGATTATTATGGCAATTGCTATTGCTGTTACATTTGGCACAAGTGGGAACCCTGGTAAACTGCCTCATTGGTATGCAATTGTGATTGTTGGTGTCATCTGTGTATATGTTTCGGGTTATGCTTGGTCTTGGGGTCCTCTAGGCTGGTTGGTACCTAGTGAAATCTTCCCTCTTGAGATTAGACCTGCTGCTCAGAGTGTCACGGTTGGTGTCAACATGATCAGCACTTTTGTCATTGCTCAATCCTTCACCGCAATGCTTTGCCACATGAAGTTTGGTACGTTCATCTTCTTTGGGTGCTTTGTGGTCATCATGACCTTGTTCATCTACAAGCTTNTGCCAGAAACAAAGGGTATCCCACTTGAGGAAATGTCAAGGATTTGGCAGAAACACCCATTCTGGGGCAGGTTTGTGGAGCCAGAAAACATCAAGGGAGACTCCAAATGTTAGTAATTGGTAGTTTTGTGTTTAGGATGATGCTGTTATGTACAAAGAGTCTGATTGGATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03654	6233	8758	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0022857 transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003654s00043429.1	PF00083.19	Sugar_tr	19	134	6.60E-20
Glyur003654s00043429.2	PF00083.19	Sugar_tr	1	300	1.40E-75

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.056
SRR1783600	control	10.234
SRR1783602	moderate drought stress	5.615
SRR1811619	moderate drought stress	5.743

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.027
DRR006520	Root Summer glycyrrhizin high producing strain	14.477
DRR006521	Root Winter glycyrrhizin high producing strain	7.961
DRR006522	Root Winter glycyrrhizin high producing strain	7.519
DRR006523	Root Summer glycyrrhizin low producing strain	14.572
DRR006524	Root Summer glycyrrhizin low producing strain	14.563
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.971
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.874

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.665
SRR2868004	Drought Stress (root)	14.241
SRR2967015	Control (root)	19.945

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.512
SRR9715740	Leaf	5.717
SRR9715741	Leaf	4.651
SRR9715739	Root	18.705
SRR9715742	Root	14.583
SRR9715743	Root	18.229

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	48.510
SRR8749028	MeJA induced 9h	56.442
SRR8749029	MeJA induced 9h	33.776
SRR8749030	Uninduced	3.717
SRR8749031	Uninduced	4.825
SRR8749032	Uninduced	11.681

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.889
SRR8400027	Control - Root	13.777