Gene detail

Gene detail information of Glyur003644s00040093

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G52640.1	0	heat shock protein 90.1
NR	XP_003533977.1	0	PREDICTED: heat shock protein 83-like [Glycine max]
COG	YP_634186.1	1.00E-110	heat shock protein 90 [Myxococcus xanthus DK 1622]
Swissprot	tr\|P51819\|HSP83_IPONI	0	Heat shock protein 83
trEMBL	tr\|I1L314\|I1L314_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G24410.1}

Sequence

Transcript Sequence

>Glyur003644s00040093.1
ATGATGAACAGGACTGAGAAGGAGATGAATCGTTGCAAGGACATGCTTGTAAATTTGAGGTCAAAAGTTAACCAAATGGCTTCAACATTGAACATGTCAAACTTTGCAAACAGGGATACTTTGGTAGGGCCAGAAATAAAATCAGATGCAATAAGCAGAACCGTTGGCTTGGATAACAGTGGAATTCTCTGGATTGTAGCTGCAATTTTCGCACTTGGGTCTGACGGATTCACACCGGAAGTGGGGAATTTCTCCACAATTTTTCATTATACTTCGGTTTGTCGTCTTCACACCAGGGGTAGGATATCTTTCACAATTGTGTATGGTTCTGATTTTGCTCTTGTTGTGATGTTGTTTAGTCATTCCGGTTATCATCTTCGTACATTGAAAAGCAAGATTGCAAGATTGAAGAGGCGCATGAGGATGGGTGCTAAAAGAGGGGAAACACAATTGGAATACTTGGAGGAGAGGAGGATCAAGGATCTTGTGAAGAAGCACTCTGAATTCATTAGCTATCCCATTTACCTTTGGACTGAGAAGACCACTGAGAAAGAAATCAGTGATGATGAAGATGATGAGCCCAAGAAGGAGGAAGAAGGGGACGTTGAGGAAGTTGACGAGGAGAAGGAGAAAGAATCGAAAAAGAAGGAAGAAAATCAAGGAGAAGAGATCACCAAGGAGGAATATGCCTCTTTCTACAAGAGCCTCACCAATGACTGGGAAGAGCACTTGGCCGTGAAGCATTTCTCTGTGGAGGGCCAACTTGAGTTCAAGGCCATCCTCTTCGTCCCAAAACGCGCACCCTTCGATCTGTTTGACACCAGGAAGAAGATGAACAACATCAAGCTTTATGTCAGGAGGGTGTTCATCATGGACAACTGCGAGGAGCTCATACCCGAGTACCTCGGATTCGTGAAGGGTGTTGTTGACTCTGATGACTTGCCCCTCAACATCTCTCGTGAGATGTTGCAACAGAACAAGATCCTGAAGGTGATCAGGAAGAACCTTGTGAAGAAGTGTATTGAGATGTTCAATGAGATTGCCGAGAACAAGGAAGATTACAACAAGTTCTATGATGCTTTCTCCAAGAATCTAAAGTTGGGCATTCACGAGGATAGCCAGAACAGGGCTAAACTTGCTGATTTGCTCAGATACCATTCTACAAAGAGTGGAGACGAAATGACAAGCTTGAAGGACTACGTTACCAGAATGAAAGAGGGTCAAAAAGACATCTACTACATTACTGGAGAGAGCAAAAAGGCTGTGGAGAACTCTCCATTCTTGGAGAGACTCAAGAAAAGGGGCTATGAGTATGCTGTTGGACAGCTGAAAGAGTACGATGGCAAGAAACTTGTTTCAGCCACAAAGGAAGGATTGAAACTAGATGACGAGTCTGAGGAGGAGAAAAAGAAGAAAGAGGAGAAGAAGAAGTCATTTGAGGAACTCTGCAAGGTGATCAAGGAAATCCTGGGAGACAAAGTGGAGAAAGTAGTTGTGTCTGACAGGATTGTGGATTCCCCATGCTGTTTGGTGACTGGTGAATATGGATGGACTGCAAACATGGAGAGGATCATGAAGGCACAGGCACTGAGGGACAACAGCATGAGCAGCTACATGTCTAGCAAGAAGACAATGGAGATCAACCCAGATAATGGTATCATGGAGGAGTTGAGGAAGAGGGCTGAAGCTGACAAGAATGACAAGTCAGTGAAGGACCTTGTGCTGCTACTGTTTGAGACTGCACTCTTGACTTCAGGTTTCAGCCTTGATGATCCTAACACATTTGCTGCAAGGATTCATAGGATGTTGAAGCTGGGTCTTAGCATTGATGAGGAGGAGACTGGTGGGGATGATGTTGACATGCCTCCTTTGGAGGAGGATGGTGCTGAGGAAAGCAAGATGGAGGAAGTGGACTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03644	7117	12281	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006457 protein folding

GO:0006950 response to stress

molecular_function

GO:0005524 ATP binding

GO:0051082 unfolded protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003644s00040093.1	PF00183.13	HSP90	152	217	1.30E-15
Glyur003644s00040093.1	PF00183.13	HSP90	221	638	1.10E-217

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.464
SRR1783600	control	3.770
SRR1783602	moderate drought stress	3.663
SRR1811619	moderate drought stress	4.045

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	40.425
DRR006520	Root Summer glycyrrhizin high producing strain	41.655
DRR006521	Root Winter glycyrrhizin high producing strain	8.604
DRR006522	Root Winter glycyrrhizin high producing strain	7.814
DRR006523	Root Summer glycyrrhizin low producing strain	43.753
DRR006524	Root Summer glycyrrhizin low producing strain	42.233
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.084
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.159

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.128
SRR2868004	Drought Stress (root)	2.375
SRR2967015	Control (root)	0.607

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.273
SRR9715740	Leaf	35.682
SRR9715741	Leaf	23.368
SRR9715739	Root	0.581
SRR9715742	Root	15.326
SRR9715743	Root	12.250

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.071
SRR8749028	MeJA induced 9h	15.055
SRR8749029	MeJA induced 9h	7.792
SRR8749030	Uninduced	2.169
SRR8749031	Uninduced	0.820
SRR8749032	Uninduced	5.275

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.558
SRR8400027	Control - Root	8.734