Gene detail

Gene detail information of Glyur003639s00042395

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	1.00E-170	NB-ARC domain-containing disease resistance protein
NR	XP_003522031.1	0	PREDICTED: putative disease resistance protein At3g14460-like [Glycine max]
COG	YP_001660791.1	5.00E-14	apoptotic protease-activating factor 1 like [Microcystis aeruginosa NIES-843]
Swissprot	tr\|Q9LRR4\|R13L1_ARATH	0	Putative disease resistance RPP13-like protein 1
trEMBL	tr\|I1JL53\|I1JL53_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G05550.1}

Sequence

Transcript Sequence

>Glyur003639s00042395.1
ATGTCAGAAATACTAGTGGGTGGAGCTTTTCTCTCTGGTTTCATCAACGTAGTCTTCGAGCGTCTCCTTTCCCCTCAAGTTGTGAACCTGATCCGAGGCAAGAAGCTTGACCAGGAGCTAATCGAAAGGCTGAAGACCGCTCTGTGTGCCGCTGAATCCCTTCTTCTCGATGCAGAGCAGAAGCAAATGGGTAACCCACTTGTGAGGAACTGGGTCGACACTCTCCGAGATGCTGTCTACGTGGCCGATGACTTATTGGACCGTGTTTTCACCAAAGCCGCAACAACTCAAAAGGGAGAGATGGAAGAGGTTGTTAGAAGAATCGAAGACATCGAAAAGCGTAGGTATGTGCTTGGTTTGAAAGAAGTTGTTGTTCCGAGGGAGAATTTGTCTTGGAGAATCCCAACAACATCCCTTGTGAAAGGGAATGTTTATGGCAGGGGAAATGACCAAGAGGCCATTATTAAAATGTTGAATGACAAAAGTGGAGATGAAATAATATCTGTGATCCCTATTGTGGGCATGGGTGGGGTTGGAAAAACCACTTTAGCACAGTGGGTGTACAATAATGAGAATTTGATGAGGGAGTTTGATTTGAAAGCATGGGTTTGTGTTTCTGAAGAGTTTGATGTTGTTAAGATTACTAAGACACTAATAGAAGGGGTGAATTCTAGTATTTGTGATGTGAAGGATTTGAATTTGCTTCAGCTTGATTTGAAGCAAAAGCTAACAGGAAAGAAATTCCTTTTTGTCTTGGATGATGTTTGGAGTAGTGTTGATTATGATGGTTGGAATAGTCTTAGGACGCCTTTTCGGTATGGGGTTAAGGGAAGTAAAATTCTTGTAACAACTCGTGATGAGAATGTGGCTTCGTTGGTCCAAACCTTTCCCCCGTATCATCTAGATGTGTTGTCTGAGGGGCATTGTTGGTNAGTCTTTGCACACCATGCATGCTTTCCGGAATCCGGTGGAAATTCGAATTTGGAAAAAATTGGTAAAGGGATTGTTAAGAAGTGCAAGGGATTGCCATTGGCTGCACAAACGCTCGGAGGGCTGTTGCGTGCAAAACATAATGTCAAGGATTGGAATACCATATTGACTAGTGACATTTGGGAATTGTCCATGAATGATAGTAAGATTATTCCAGCACTGAGAATAAGTTATTACCATCTCCCTCCACATTTAAAACGTTGTTTTGTTTATTGCTCATTGTATCCCAAGGATTATATATTTCATAGAGATGAATTAATCTTATTATGGATGGCAGAAGATCTTTTAGTGCAACCAAAGAGAGGAAAGACTTTAGAAGAAGCAGGTTCTGAGTGTTTTGATGAATTAGCTTCCAGATTATTTTTCAAACAGTGTGAAACTTATGACAAGTCTTTTGTGATGCATGACCTCATGCATGACTTAGCGATATCTATTGCTGGAGACTTCTATTTTAGATCAGAAGAACTTGGGAAAGAAGACAAAATTAAAGTGAATATTCGTCATTTGTCATATGGAAGGTTAAGTCATCCGATCTCAAAAGGTTTTGATGCCATTGGTACATTAGAATCTTTAAGGACCTTTTTGCATATTGATTTTCCACCTTTGTCATTCAGTTTTGAAAACGTAGCATTGACTGTATTATCGAAGTTTAAGTATCTAAGAGTTTTGTCATTTCNTTACTTCTGGAAACTTGATGTATTGCCTGATTCAATTGGTGAATTGATCCATCTGCGTTACTTGAATCTTTCTTGGACAAGTATCAAGACATTGCCAAAATCATTGAGTAACTTGTACAATCTGCAAACGTTGAAGCTATTAGAATGTGATAAGCTGATTAAGCTGCCAAGTGGCATGCAAAATCTTGTGAACTTGCTGCATCTTGATATTAGAGGAACTGATTTAAAAGAGATGCCTCCAGGAATAAGCAAATTAAAACATTTGCAGCTTTTAAGTTACTTTATTGTGGGTGAGCATGAAAAGAATGGGATAAAGGAATTAGGAGAACTTTCAAATCTCCATGGATCACTATGGATTAGAAAATTGGAGAATGTTACCAATAGTGGTGAGGCAGGGGAGGCAAGGATGATGGATAAGTTGCAAATTGAAAATTTGGTGTTGGAATGGTCTTTGGGTGTTGATATGGTTACAACCTCTACGCACACCGAAAGAGAAATATTGGACAAGTTACAACCTCACAAAGGCTTGAAAGTTCTTAAAATTGAGAGGTATAGGGGTACAATATTTCCTGATTGGGTAGGGCATTCTTCCTACACCAATGTGACTCGTGTAAGTCTTGAGTCTTGTAGCAATTGTTGTATGCTTCCTTCACTTGGACAACTACCCTCTCTCAAGTACTTGGAGATTGCAGATTTTAATGGGGTGGAGACTATTGGTGCCGAATTTTACAAGAATGATGATGATCATTATTCTTCAGCAACACCCTTTCCGTCCTTAGAGTTTCTTTCATTTTATAGAATGTCATGTTGGGAGGTTTGGGATTCGTCTCAATTAGATGCTTTTCCACAACTTAAGCACCTTAAAATAGATGATTGCCCCAACTTAACAGGAGATCTGCCTAATTTCCTTCCTGCTTTGGAAACACTCGAGATTCACAATTGTCAACACCTTGTTTCTGCTCTTCCAAGGGCTCCCGCACTTTCCAAGTTAAGGATATATGAAAGCAACAAAGTAGAATTGAAAGAGTTACATGTTGCATTGCAGTCTGTGCTTATTGGAGGATGTCATCCAGTGGGATGCCTGTTTCAGGCAATGACCATCAATCACCCAACTTGTCTGCAGTATTTAACTATCTCAGGTTGTTCGTCTGCCTTATCATTCCCGGGCCATTGTTTACCAGAATGTTTGAAAGCACTGAGAATCTGGAACTGTGAAAAACTAGAATTCCCAAAGCAACATCAACACAGGCTGCTAGAGTCACTTCAAATAGTTAACAGCTGCAATTCACTCACATCCTTCCCATTGGAGACCTTTCCTAATCTTAAGATTCTAGAAATAAAAAACTGCAAAAGTGTAGAATGTCTTTCGGCGCCACAGTCACAAGTTTATGCTCTTNACAATCTCATCATCAGTGGCTGCCCCAATTTTGTATCCTTTCCAAAAGAAGGATTGTCTGCACCCAGCATGATTGGTTTCAAGGTCGTCAAATGCAACAAGTTGAAGTCACTGCCTGATCACATGAATACTCTTCTCCCAAATTTAAAGCATCTTCAAACAACTGATTGCCTAGAAATGGATGCTTTTCCGAAAGGAGGTCTTCCCCCTAACTTGACATTACTTGAAATCTGGAATTGCGGGAGACTAATGAGGCGCCTAGCGTCGATCAGTTTGCACCATGGGCATCTCACCACTCTTATCATTGGTGGTCCCTGTGAGAGTGTCCAGACATTCCCAAAGGATGGTTTGCTGCCTCAACTTCCCTTCCTCACCACTCTGCAACTTCGTAGATTGTCAAGTCTGGACACGTTGAACTGCAANGAGCTTCTCCGCCTCACCTCCCTGCAACAGTTAAGCATTGTAAAATGTCCCAAGCTGGAGAATATTGTGGGAGAAAGGTTGCCTCCTTCTCTTATAAAACTTGAAATCAATGGTACTCCTTTGCTGGAAGAACAATGCAAGATGAAGCACCCGCAAATTTGGCCCAAGATTTTCCACGTCCCCAATATTCAGATTAATTGGAGATGGATGTCATGA

Protein Sequence

>Glyur003639s00042395.1
MSEILVGGAFLSGFINVVFERLLSPQVVNLIRGKKLDQELIERLKTALCAAESLLLDAEQKQMGNPLVRNWVDTLRDAVYVADDLLDRVFTKAATTQKGEMEEVVRRIEDIEKRRYVLGLKEVVVPRENLSWRIPTTSLVKGNVYGRGNDQEAIIKMLNDKSGDEIISVIPIVGMGGVGKTTLAQWVYNNENLMREFDLKAWVCVSEEFDVVKITKTLIEGVNSSICDVKDLNLLQLDLKQKLTGKKFLFVLDDVWSSVDYDGWNSLRTPFRYGVKGSKILVTTRDENVASLVQTFPPYHLDVLSEGHCWXVFAHHACFPESGGNSNLEKIGKGIVKKCKGLPLAAQTLGGLLRAKHNVKDWNTILTSDIWELSMNDSKIIPALRISYYHLPPHLKRCFVYCSLYPKDYIFHRDELILLWMAEDLLVQPKRGKTLEEAGSECFDELASRLFFKQCETYDKSFVMHDLMHDLAISIAGDFYFRSEELGKEDKIKVNIRHLSYGRLSHPISKGFDAIGTLESLRTFLHIDFPPLSFSFENVALTVLSKFKYLRVLSFXYFWKLDVLPDSIGELIHLRYLNLSWTSIKTLPKSLSNLYNLQTLKLLECDKLIKLPSGMQNLVNLLHLDIRGTDLKEMPPGISKLKHLQLLSYFIVGEHEKNGIKELGELSNLHGSLWIRKLENVTNSGEAGEARMMDKLQIENLVLEWSLGVDMVTTSTHTEREILDKLQPHKGLKVLKIERYRGTIFPDWVGHSSYTNVTRVSLESCSNCCMLPSLGQLPSLKYLEIADFNGVETIGAEFYKNDDDHYSSATPFPSLEFLSFYRMSCWEVWDSSQLDAFPQLKHLKIDDCPNLTGDLPNFLPALETLEIHNCQHLVSALPRAPALSKLRIYESNKVELKELHVALQSVLIGGCHPVGCLFQAMTINHPTCLQYLTISGCSSALSFPGHCLPECLKALRIWNCEKLEFPKQHQHRLLESLQIVNSCNSLTSFPLETFPNLKILEIKNCKSVECLSAPQSQVYALXNLIISGCPNFVSFPKEGLSAPSMIGFKVVKCNKLKSLPDHMNTLLPNLKHLQTTDCLEMDAFPKGGLPPNLTLLEIWNCGRLMRRLASISLHHGHLTTLIIGGPCESVQTFPKDGLLPQLPFLTTLQLRRLSSLDTLNCXELLRLTSLQQLSIVKCPKLENIVGERLPPSLIKLEINGTPLLEEQCKMKHPQIWPKIFHVPNIQINWRWMS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03639	15969	20321	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003639s00042395.1	PF00931.17	NB-ARC	151	426	2.60E-74

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.312
SRR1783600	control	1.331
SRR1783602	moderate drought stress	5.225
SRR1811619	moderate drought stress	5.268

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.143
DRR006520	Root Summer glycyrrhizin high producing strain	1.109
DRR006521	Root Winter glycyrrhizin high producing strain	3.210
DRR006522	Root Winter glycyrrhizin high producing strain	3.165
DRR006523	Root Summer glycyrrhizin low producing strain	0.309
DRR006524	Root Summer glycyrrhizin low producing strain	0.374
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.543
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.525

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.552
SRR2868004	Drought Stress (root)	6.629
SRR2967015	Control (root)	5.166

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.971
SRR9715740	Leaf	0.187
SRR9715741	Leaf	2.716
SRR9715739	Root	0.080
SRR9715742	Root	1.584
SRR9715743	Root	1.399

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.982
SRR8749028	MeJA induced 9h	7.009
SRR8749029	MeJA induced 9h	1.524
SRR8749030	Uninduced	2.905
SRR8749031	Uninduced	0.977
SRR8749032	Uninduced	1.269

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.707
SRR8400027	Control - Root	3.375