Gene detail information of Glyur003636s00041184 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G16190.1 | 3.00E-50 | Isochorismatase family protein |
| NR | KHN04223.1 | 1.52E-116 | Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB [Glycine soja] |
| COG | YP_007247815.1 | 2.00E-24 | nicotinamidase-like amidase [Methanoregula formicica SMSP] |
| Swissprot | tr|Q93Z51|NIC4_ARATH | 4.00E-70 | Probable inactive nicotinamidase At3g16190 {ECO:0000305} |
| trEMBL | tr|I1KGM0|I1KGM0_SOYBN | 6.00E-117 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G02130.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03636 | 16510 | 20364 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003636s00041184.1 | PF00857.15 | Isochorismatase | 78 | 182 | 1.20E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.389 |
| SRR1783600 | control | 3.446 |
| SRR1783602 | moderate drought stress | 3.457 |
| SRR1811619 | moderate drought stress | 3.511 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.305 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.278 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.917 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.746 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.985 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.177 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.309 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.106 |
| SRR2868004 | Drought Stress (root) | 10.750 |
| SRR2967015 | Control (root) | 12.223 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 29.004 |
| SRR9715740 | Leaf | 37.164 |
| SRR9715741 | Leaf | 32.734 |
| SRR9715739 | Root | 4.129 |
| SRR9715742 | Root | 4.875 |
| SRR9715743 | Root | 4.944 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.653 |
| SRR8749028 | MeJA induced 9h | 10.065 |
| SRR8749029 | MeJA induced 9h | 5.374 |
| SRR8749030 | Uninduced | 5.658 |
| SRR8749031 | Uninduced | 3.120 |
| SRR8749032 | Uninduced | 2.128 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.751 |
| SRR8400027 | Control - Root | 12.510 |