Gene detail

Gene detail information of Glyur003636s00041182

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G52190.1	2.00E-172	Major facilitator superfamily protein
NR	XP_003530142.1	0	PREDICTED: probable peptide transporter At1g52190-like [Glycine max]
COG	YP_002494545.1	1.00E-09	amino acid/peptide transporter [Anaeromyxobacter dehalogenans 2CP-1]
Swissprot	tr\|Q9M817\|PTR6_ARATH	0	Protein NRT1/ PTR FAMILY 1.2
trEMBL	tr\|I1KGM2\|I1KGM2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G02140.1}

Sequence

Transcript Sequence

>Glyur003636s00041182.1
CAAGACACTGAAATGGTTTTTGTTGACTCTTGAAGAAAGGAGATCGCAGACAGAGACTCCCATGTTTGTGTAGGTGAAGATGAAGATTTCTATTTAAACTATAAAAAGGAATAGGAAGAACCCCTTTAANAGCAACTGGTCAATGGAGAAGGAAATGGAAGATCTTTCCTCATCTCAAGCAAAAATGGGTTCTTCCCAAAGCATTTCACAACCCCAAAGGCGCAAAGGTGGCATCATTACCATGCCCTTCATCATAGCAAATGAAGCACTTGCAAGGGTTGCAACATTGGGACTCTTACCTAACATGATACTGTACTTGATGGGAACTACAATCTTCATTTATCAAAAGCTACCCACATACTCCTCTTATCAGTTGCAACCACCAATTTCATGCCTCTCCCTGGTGCTTTCATTGCTGATTCTTATCTGGGTCGATTCCTTGCTGTTGGTTTGGTTCCATCATTACTTTCTTGGTAGGTGTTGTTGTTCCTTTTTTTCCATCACAACAAGCCATGTGGGAATGGCTCTCCTGTGGCTAACAGCCATGATTCCACAGGCACAGCCGCCTCCTTGCAACCCTGCAACCGAAAGATGTACATCAGCAACAACTGGTCAAATGGCCATGTTAATCTCTTCCCTTGCTCTCATGTCCATTGGAAATGGTGGCCTTTCATGCTCCATAGCATTCGGCGCGGACCAGGTGAATAGGAAAGACAACCCCAATAACAAGAGGGCCTTGGAAATATACTTCAGCTGGTATTATGCTTCCTCAGCCATTTCTGTCATAATTGCCTTCACAGGAATAGTATATATCCAAGATCACCTTGGATGGAAACTNGGNTTTGGAGTTCCTGCNGCACTTATGTTCCTATCCACTTTNCTCTTCTTCCTTGCTTCTCCTGTTTATGTAAAGAATAAAACACACAGCAGCTTGTTCACTGGCTTCGTACAAGTGATTGTAGTGGCCTATAAGAACAGGAAACTTCGATTACCATCTGAGAACTCGACTGGAATGTATCATCGTATGAAGGACTCTGAACTTGTTGTTCCAACCGATAAACTAAGGTTTCTGAATAAAGCTTGCTTCATTAAGGACCCAGAAAAAGATATAGCCTCTGATGGATCAGCCTCAAATCCGTGGAGTCTCTGCACAATAGATCAAGTAGAAGAACTAAAAGCCATTGTTAAAGTTATTCCCCTTTGGTCTACAGNTATCATGATGTCACTTAACATTGGAGGCTCATTTGGNTTGCTGCANGCNAAATCGCTGAACAGACACATCACTCCAAACTTCGAAGTTCCAGCCGGTTCTCTTTCCGTCATCATGATATTTACAATATTTATATGGATAGCTCTTTATGACCGCGTCGTCATTCCTCTAGCATCAAAGCTCAGAGGCAAACCNGTTAGGATCAGTGCCAAGAGAAGAATGGGACTCGGGTTGTTCTTCTCTTTTCTTCACTTGGTAACCGCAACAATCGTCGAGACCGTAAGGCGAAGGAGAGCAATCAGTGAGGGGTACATTAATGACCCTCATGCAGTNNTGAACATGTCTGCAATGTGGCTTTTCCCTCAACTTTGCTTGGGTGGCATAGCTGAAGCATTCAATGCAATAGGCCAAAANGAGTTCTACTACACNNAGATTCCCAAGACCATGTCNAGCATCGCTTCTTCCCTTTTCGGACTGGCAATGGCTGCGGGATACATGGTGTCTTCTCTGGTATTCAGCATTGTAGAAAACATTACCTCAAAAGGGGGAAAGGATGGGTGGGTTTCGGATAANATNAACAAGGGTCGTTTTGACAAGTACTACTNGGTTCTTGCCACACTTAGTGCTGTTAATATACTCTATTACTTAGTATGCAGTAGAGCTTATGGACCTACCACTGTTCAAGAATCAAAGGTAACTGAAAAAACTAGTTCAAATGAGGAAGAATTGCCATTAATTGGCCTCAGAAATGAGGGTCCATATGACAAGGGTCAGTGAAGGAATTTTAAGAACTTTATGACATGGGTTTCTTTTGATTCTCTTTTATATTTGGGCAGTTGAAACATGTAGCTGGTGATGAGAATNCAAGTGTAAGTGGTAAAGAGAGTGAATCAGTCAAGTCCCACATTGGTTAGGAAATGACTAAATGAANAGAATATAAGAGAAGAAAATATAAGAGACAAAACCCATATAATTAATATTTTTAAGGTTCGTCCCGGCTTCCAAGCTACGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03636	11837	14789	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003636s00041182.1	PF00854.16	PTR2	125	515	6.30E-56

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.084
SRR1783600	control	9.327
SRR1783602	moderate drought stress	7.611
SRR1811619	moderate drought stress	7.395

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.688
DRR006520	Root Summer glycyrrhizin high producing strain	10.580
DRR006521	Root Winter glycyrrhizin high producing strain	5.647
DRR006522	Root Winter glycyrrhizin high producing strain	5.401
DRR006523	Root Summer glycyrrhizin low producing strain	8.552
DRR006524	Root Summer glycyrrhizin low producing strain	9.155
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.485
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.620

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.207
SRR2868004	Drought Stress (root)	10.642
SRR2967015	Control (root)	9.734

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.313
SRR9715740	Leaf	2.653
SRR9715741	Leaf	3.541
SRR9715739	Root	2.136
SRR9715742	Root	7.746
SRR9715743	Root	7.331

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.209
SRR8749028	MeJA induced 9h	3.978
SRR8749029	MeJA induced 9h	2.095
SRR8749030	Uninduced	3.609
SRR8749031	Uninduced	1.548
SRR8749032	Uninduced	2.132

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.851
SRR8400027	Control - Root	8.416