Gene detail information of Glyur003622s00041485 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G53020.1 | 1.00E-52 | Ribosomal protein L24e family protein |
| NR | XP_003590400.1 | 2.55E-68 | 60S ribosomal protein L24 [Medicago truncatula] |
| COG | YP_003736908.1 | 6.00E-09 | 50S ribosomal protein L24E [Halalkalicoccus jeotgali B3] |
| Swissprot | tr|O65743|RL24_CICAR | 3.00E-68 | 60S ribosomal protein L24 |
| trEMBL | tr|Q1SN35|Q1SN35_MEDTR | 1.00E-68 | Uncharacterized protein {ECO:0000313|EMBL:AFK37423.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03622 | 14128 | 16835 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003622s00041485.1 | PF01246.15 | Ribosomal_L24e | 3 | 73 | 3.80E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 46.747 |
| SRR1783600 | control | 46.278 |
| SRR1783602 | moderate drought stress | 53.261 |
| SRR1811619 | moderate drought stress | 49.845 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 149.486 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 145.690 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 87.633 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 78.782 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 139.677 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 123.221 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 43.718 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 46.219 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 202.884 |
| SRR2868004 | Drought Stress (root) | 109.505 |
| SRR2967015 | Control (root) | 92.602 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 59.473 |
| SRR9715740 | Leaf | 63.139 |
| SRR9715741 | Leaf | 41.218 |
| SRR9715739 | Root | 33.399 |
| SRR9715742 | Root | 30.918 |
| SRR9715743 | Root | 32.466 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 227.961 |
| SRR8749028 | MeJA induced 9h | 107.427 |
| SRR8749029 | MeJA induced 9h | 150.733 |
| SRR8749030 | Uninduced | 30.170 |
| SRR8749031 | Uninduced | 20.033 |
| SRR8749032 | Uninduced | 123.537 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 78.598 |
| SRR8400027 | Control - Root | 92.308 |