Gene detail information of Glyur003610s00041429.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G01520.1 | 2.00E-93 | RING/U-box superfamily protein |
| NR | XP_004492434.1 | 4.87E-171 | PREDICTED: uncharacterized protein LOC101510339 isoform X2 [Cicer arietinum] |
| trEMBL | tr|I1N2W9|I1N2W9_SOYBN | 3.00E-158 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G42920.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03610 | 6126 | 9860 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003610s00041429.1 | PF13920.1 | zf-C3HC4_3 | 158 | 204 | 1.60E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.172 |
| SRR1783600 | control | 2.226 |
| SRR1783602 | moderate drought stress | 2.498 |
| SRR1811619 | moderate drought stress | 2.643 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.172 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.212 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.692 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.145 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.455 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.723 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.341 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.777 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.319 |
| SRR2868004 | Drought Stress (root) | 9.575 |
| SRR2967015 | Control (root) | 9.879 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.394 |
| SRR9715740 | Leaf | 7.674 |
| SRR9715741 | Leaf | 4.075 |
| SRR9715739 | Root | 0.786 |
| SRR9715742 | Root | 2.649 |
| SRR9715743 | Root | 3.489 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.513 |
| SRR8749028 | MeJA induced 9h | 20.590 |
| SRR8749029 | MeJA induced 9h | 23.633 |
| SRR8749030 | Uninduced | 7.620 |
| SRR8749031 | Uninduced | 13.120 |
| SRR8749032 | Uninduced | 12.116 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.296 |
| SRR8400027 | Control - Root | 5.170 |