Gene detail information of Glyur003607s00043717 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G42860.1 | 3.00E-06 | zinc knuckle (CCHC-type) family protein |
| NR | CDY31761.1 | 1.19E-06 | BnaA04g16970D [Brassica napus] |
| trEMBL | tr|A0A078H1V4|A0A078H1V4_BRANA | 4.00E-07 | BnaA04g16970D protein {ECO:0000313|EMBL:CDY31761.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03607 | 20851 | 21449 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003607s00043717.1 | PF06839.7 | zf-GRF | 34 | 76 | 2.40E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.121 |
| SRR1783600 | control | 3.237 |
| SRR1783602 | moderate drought stress | 13.751 |
| SRR1811619 | moderate drought stress | 11.933 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.141 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.273 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.965 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.345 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.444 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.083 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.008 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.088 |
| SRR2868004 | Drought Stress (root) | 0.167 |
| SRR2967015 | Control (root) | 0.502 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.660 |
| SRR9715740 | Leaf | 1.116 |
| SRR9715741 | Leaf | 1.223 |
| SRR9715739 | Root | 6.952 |
| SRR9715742 | Root | 1.526 |
| SRR9715743 | Root | 3.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.419 |
| SRR8749028 | MeJA induced 9h | 0.521 |
| SRR8749029 | MeJA induced 9h | 1.155 |
| SRR8749030 | Uninduced | 0.379 |
| SRR8749031 | Uninduced | 0.307 |
| SRR8749032 | Uninduced | 0.800 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 21.998 |
| SRR8400027 | Control - Root | 7.328 |