Gene detail

Gene detail information of Glyur003598s00040473

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38720.1	5.00E-140	microtubule-associated protein 65-5
NR	XP_004511089.1	0	PREDICTED: 65-kDa microtubule-associated protein 5-like [Cicer arietinum]
Swissprot	tr\|Q9ZVJ3\|MA655_ARATH	0	65-kDa microtubule-associated protein 5
trEMBL	tr\|G7LID1\|G7LID1_MEDTR	0	Microtubule associated protein, MAP65/ASE1 family protein {ECO:0000313\|EMBL:AET02488.1}

Sequence

Transcript Sequence

>Glyur003598s00040473.1
ATGGCGGTCACGCCTCCTTCCTTCTCTCCCTCTCGCACCACCTGCGCTTCTCTCCTCCGCCAATTGCAGATGATATGGGATGAGATTGGGGAGAGTGACAACGATAGAGACAACATGCTTCTTCAACTGGAGCAAGAGTGCCTTGACATTTATCACAGAAAGGTTGAGGAAACGAGAAAGCACAAAGCTGACTTATACAAGTGGTTGGCTGACGCTGAATCTGAAGTCACCAATCTTGCTTCGTCCCTTGGGGAATGTGGCTCGTTCTCACGGGTGAAGGGCACTCTGAAGCAGCAATTAGCTACAATAAGACCTGTCTTAGAGGACTTGAGGTTAAAGAAGGATGAGAGAATCAAGGAATTCTCAAAGATACAGTCCCAAATTTCTCAGATATGTGCTGAAATTGCAGTCTGTGGACAGTCCAAAAACGTCACAGATCCAGAAGTTGATCAATGTGATCTGACAGTGAAGAAATTGGGAGAACTTAAGTCGCATCTCCAGGAACTTCAAAATGAGAAGATCTTGCGCCAGCAGAAAGTGAAGAGTCATATCGGTACTATCAGTGAGCTTTCAGCAGTAATGTCAATTGATTTTTGGAAGACTTTAAATGACATTCACCCGAGCTTGAGTGATTCATCGAAAGGTACACTACAAAGCATTAGTAATGACACTCTTGCCAGATTAACCGGGGTTATTCATTCATTAAAGCAGCAGAAGCAACAAAGGCTACAAAAGGTACAAGAACTTGCTAAATTCCTGGTAGAGTTATGGGATCTTATGGAGATACCAATTGATGAACAAAAGGCCTTTAGCCATGTTACTAGATTAATTTCAGCATCAGTTGACGAAGTATCAACACAAGGGTGCCTTTCTGCGGATGTCATTGAGCAGGTTGAGGTTGAAGTTGAGCGCTTAAATGTTTTGAAAGCCAGTAAAATGAAGGATTTAGTCTTTAAAAGACAGAGTGAACTTGAAGAAATTTACAGAGGAGTTCACATGGATGTGGATAGTGAAGCTGCTAGACAGATCCTGACCAGCCTCATAGAATCTGGTAATGTTGACCTGTCTGATTTGCTTCAAAGCATGGATGATCAAATCAGAAAGGCCAAAGAACAAGCTCTAAGCAGAAGAGATATCTTAGATAGGGTAGAGAAATGGAAATTTGCAGCTGAGGAGGAAAAGTGGTTAGATGAATATGAAAGGGTAGATAACATTTTTAATGCAGTGAGAGGAGCACACAAAAATTTGAAGCGTGCAGAGAAAGCACGGATTCTTGTCAGCAAGATACCATCTATTGTTGAGAATTTGACTGCAAAAGTAAAAGCCTGGGAGATGGAAAAAGGAATACCTTTCTTATATGAAAAGGTTCCATTGTTAGATAGCTTGGATGAATATAATGCACAACGGCAACTGAGAGAAGAAGAGAAGCGAAAATCTCGGGAGCAGAAACGGCTGCAGGAACAACATGCTGTAGAGCAAGAAGCACTTTTTGGTTCAAGGTCTGCAACAAAGAAGCCTCTGGGTCAGAGCACTAATGCTAACACCATGATTGGGACACCAACTGGGCGCCGAATGGCTACTCCTTCAGGCCGTTATGGAACCTCGGGTGCAAAGGACCGTAGAGAAAGTGGCAGAGTGAATAACATAATTCCAGTGAACTATGTTGCTCTTCCAAAAGATGATTCTGCTTCTCGGGGTAGTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03598	366	5794	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000226 microtubule cytoskeleton organization

GO:0000910 cytokinesis

molecular_function
GO:0008017 microtubule binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003598s00040473.1	PF03999.7	MAP65_ASE1	37	521	9.70E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.699
SRR1783600	control	0.745
SRR1783602	moderate drought stress	0.470
SRR1811619	moderate drought stress	0.530

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.273
DRR006520	Root Summer glycyrrhizin high producing strain	1.416
DRR006521	Root Winter glycyrrhizin high producing strain	1.166
DRR006522	Root Winter glycyrrhizin high producing strain	1.270
DRR006523	Root Summer glycyrrhizin low producing strain	1.005
DRR006524	Root Summer glycyrrhizin low producing strain	1.019
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.455
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.324

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.376
SRR2868004	Drought Stress (root)	2.444
SRR2967015	Control (root)	2.426

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.792
SRR9715740	Leaf	0.089
SRR9715741	Leaf	0.433
SRR9715739	Root	0.158
SRR9715742	Root	0.759
SRR9715743	Root	0.351

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.527
SRR8749028	MeJA induced 9h	4.138
SRR8749029	MeJA induced 9h	3.282
SRR8749030	Uninduced	0.793
SRR8749031	Uninduced	0.501
SRR8749032	Uninduced	0.789

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.243
SRR8400027	Control - Root	2.208