Gene detail information of Glyur003584s00043112 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G23160.1 | 1.00E-87 | cysteine-rich RLK (RECEPTOR-like protein kinase) 8 |
| NR | CAN68477.1 | 0 | hypothetical protein VITISV_029627 [Vitis vinifera] |
| COG | YP_004585717.1 | 7.00E-09 | Ribonuclease H [Frankia symbiont of Datisca glomerata] |
| Swissprot | tr|P10978|POLX_TOBAC | 2.00E-68 | Endonuclease |
| trEMBL | tr|A5BZB2|A5BZB2_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN68477.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03584 | 10097 | 18315 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| -- |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003584s00043112.1 | PF00665.21 | rve | 218 | 266 | 2.70E-10 |
| Glyur003584s00043112.1 | PF07727.9 | RVT_2 | 436 | 613 | 4.60E-54 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.668 |
| SRR1783600 | control | 10.697 |
| SRR1783602 | moderate drought stress | 9.443 |
| SRR1811619 | moderate drought stress | 9.626 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.035 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.180 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.588 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.415 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.465 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.523 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.714 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.759 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.630 |
| SRR2868004 | Drought Stress (root) | 0.637 |
| SRR2967015 | Control (root) | 0.678 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.093 |
| SRR9715740 | Leaf | 0.003 |
| SRR9715741 | Leaf | 0.113 |
| SRR9715739 | Root | 0.453 |
| SRR9715742 | Root | 0.051 |
| SRR9715743 | Root | 0.148 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.999 |
| SRR8749028 | MeJA induced 9h | 1.535 |
| SRR8749029 | MeJA induced 9h | 1.066 |
| SRR8749030 | Uninduced | 0.714 |
| SRR8749031 | Uninduced | 1.563 |
| SRR8749032 | Uninduced | 1.310 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.500 |
| SRR8400027 | Control - Root | 0.576 |