Gene detail

Gene detail information of Glyur003578s00039365

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G05500.1	Calcium-dependent lipid-binding (CaLB domain) family protein
NR	XP_004508446.1	PREDICTED: synaptotagmin-5-like isoform X2 [Cicer arietinum]
Swissprot	tr\|Q8L706\|SYT5_ARATH	Synaptotagmin-5
trEMBL	tr\|G7JFF5\|G7JFF5_MEDTR	Calcium-dependent lipid-binding (CaLB domain) family protein {ECO:0000313\|EMBL:AES91631.1}

Sequence

Transcript Sequence

>Glyur003578s00039365.1
GAAGAAAGCGAGAAGCAGGGTGACTCCCTCCCCCGACACTTGAAAAAGCCGCAAAGATTCGTACACTTTTCGTGCCTACTTACTGACCAACAACCATTTCAACTGATTCAACCTCCACAATAGAATACTCCACTAGTAGTAGTAACTAATAAATAATCACTACTACTGTAAATGTAATTACTAATGATGAATAATTATTAATCTATTACTTCTATTTTCAGAGTCACAGGTTTCACGCCGAGCTCTGAAAGCAAGGAGGATCATCTCAAGTTTTATTAGGGAAAAAGAAAAGAAGGAAGAAGGAAGAAGAAGGGAGGGATGGGTTTCGTGTTTGGGGTGGTGGTGGGGATAGTGGTTGGGCTGGGCATCATAGTGGGCTTCGTCCGGTCCGAGAATGCGCGGTCCAGCCAACGGTCCCAGCTGGCAACCACCGTCGCCGCTTTCGCCAGGATGACCGTGGAAGATTCCAGAAAGATCTTGCCCTCTCAGTTCTACCCTTCCTGGGTCGTCTTCTCTTCCAGGCAGAAGCTCACTTGGCTCAACTCCCATCTCACCAAGATCTGGCCCTATGTCAATGAGGCTGCTTCTGAGCTCATCAAGACTTCGGTGGAACCCATCCTTGAAGAATATAGACCCATAGTTTTGGCTGCTCTCAAGTTTTCCAAGTTCACTCTTGGTACTGTAGCACCGCAGTTCACAGGGGTGTCTATAATTGAAGATGGAGGGGATGGTGTTACAATGGAGTTAGAAATGCAGTGGGATGGTAATCCAAGTATTATACTTGATATTAAAACTCTGCTCGGTGTTGCACTACCAGTGCAGGTAAAAAATATAGGATTTACAGGCATTTTCAGGTTGATTTTTAAGCCACTGGTTGATGAATTTCCTGGCTTTGGAGCTATTAGCTATTCATTAAGGCAGAAGAAAAAGCTAGATTTTACGCTAAAAGTCATTGGTGGCGACATATCAACAATCCCTGGATTATACGATGCAATTGAGGGGGCAATCCGGGATGCTGTTGAAGATTCTATTACATGGCCTGTGAGAAAAATTGTACCCATTTTGCCTGGAGATTACAGTGACCTGGAGTTGAAGCCTGTGGGGATATTAGAAGTCAAGCTTGTGCAAGCAAAGGAATTAACAAACAAGGATATGATTGGAAAGTCAGATCCTTATGCTGTAGTATACATACGACCTTTACGCAGCAGAATGAAAAAAAGCAAGACAATTAACAATGATTTGAATCCAATATGGAATGAACACTTTGAATTCATCGTTGAAGATGCGTCCACTCAGCACTTAATTGTTAAAGTTTATGATTCTGAGGGCTTACAGTCGTCTGAATTGATTGGATGTGCTGAAATGAGGCTCAGTGAACTTGAACCTGGTAAAGTAAAAGATGTGTGGTTGAAGCTGGTCAAGGATTTGGAGATCCAAAGAGACAACAAGAACAGAGGACAGAATAGCTTTACCAACCCATTTTCTCCCAACTACTCAATGACATCCTTGGAAAAGGTTCTTAAAAGTGGAACGAATGGAGTGGAGTCTAATGGACATGAAGAAGCAGTTGCACAGAAGAGAAAGGAGGTTATTATTAGAGGAGTCCTTTCTGTTACTGTGATATCTGGCGAAGACTTGCCTGCTGTAGATTTCATGGGGAAATCTGATCCTTTTGTTGTTCTTACGTTGAAGAAAACTGAAACAAAAAACAAAACCAGGGTTGTGAACGACACCTTGAATCCTGTTTGGAATCAAACATTTGACTTTGTTGTAGAGGATGGATTACATGATATGCTAATGGTTGAAGTTTGGGACCACGACACATTTGGAAAGGATTATATGGGCAGAGTGATATTGACGCTTACCAGGGTAATACTGGAGGGGGAATACAAAGAACGTTTTGAGCTAGATGGTGCGAAATCTGGCTATTTGAATTTGCATCTCAAGTGGATGCCACAACCAATTTACCGTGATTCTTAAGTTTTCCTTTAAACCTCCCTGGCACTTTATAGAGGAATGCAGTTGTGGATATCTGGACCATATTGTCACNTAATCGTGCATCTTGTATCTTGTGATACAGTTATAGCAAGCAGTGTAAATTATTGTCTCGTCAAACCTGGTAAAGATATACAATTTTCTAGATCAGATTATTGTTTTCAATCTTTCTTCCCCGTTATTGTTTTNTATTAAATTAAATTAAATGCCCCATTGATGATGGGTTACATTACATCTCACATGGTTGGATAACTATCTTTTTGCTATAGGCTCTTGATGCACTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03578	1702	8611	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003578s00039365.1	PF00168.25	C2	264	347	1.20E-23
Glyur003578s00039365.1	PF00168.25	C2	430	511	1.60E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.964
SRR1783600	control	21.841
SRR1783602	moderate drought stress	20.125
SRR1811619	moderate drought stress	19.504

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	39.402
DRR006520	Root Summer glycyrrhizin high producing strain	38.804
DRR006521	Root Winter glycyrrhizin high producing strain	13.789
DRR006522	Root Winter glycyrrhizin high producing strain	13.302
DRR006523	Root Summer glycyrrhizin low producing strain	28.191
DRR006524	Root Summer glycyrrhizin low producing strain	27.719
DRR006525	Leaf Summer glycyrrhizin high producing strain	31.494
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.963

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	71.184
SRR2868004	Drought Stress (root)	62.028
SRR2967015	Control (root)	61.570

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	34.875
SRR9715740	Leaf	32.329
SRR9715741	Leaf	37.944
SRR9715739	Root	4.721
SRR9715742	Root	17.275
SRR9715743	Root	16.606

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.066
SRR8749028	MeJA induced 9h	15.853
SRR8749029	MeJA induced 9h	15.957
SRR8749030	Uninduced	5.822
SRR8749031	Uninduced	1.536
SRR8749032	Uninduced	2.931

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	45.762
SRR8400027	Control - Root	49.161