Gene detail

Gene detail information of Glyur003571s00044387

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G50180.1	2.00E-153	NB-ARC domain-containing disease resistance protein
NR	XP_004488028.1	0	PREDICTED: putative disease resistance protein At1g50180-like isoform X2 [Cicer arietinum]
COG	YP_001278320.1	2.00E-13	NB-ARC domain-containing protein [Roseiflexus sp. RS-1]
Swissprot	tr\|Q9SX38\|DRL4_ARATH	0	Putative disease resistance protein At1g50180
trEMBL	tr\|G7IID2\|G7IID2_MEDTR	0	Disease resistance protein (CC-NBS-LRR class) family protein {ECO:0000313\|EMBL:AES65375.1}

Sequence

Transcript Sequence

>Glyur003571s00044387.1
ATGGCAAGACCTATAGTGGATTTCATAGTGCAAAGGCTAAGTGATTTGCTGATTCAGGAAGCAGTTTTCTTATATGGGGTTGAAGACAAGGTGAAGCAGCTTCAAACAGAATTGAGGAGGATGGAATCTTATTTGCAAGATGCAGATAGAAGGCAAGAAGAAGATAAAAGCCTCAGCAANTGGATTTCAGAAATCAGAGAAGCTGCTTATGATTCTGATGATGTCATTGAGTCACATGCCCTCAAAGAAGCAGCCTCAAGAACAAACATGACAACANGCATCCTTAACCGCATCAAAAGGTATGTTCTAATCATCAACAAGTTAATAGAAATTCACAAGGTGGGGTCTCAAGTAGATAATATCATTGCCAGAATCACTAGCCTCACCAGGAGTTTGGAAACTTTTGGAATAATCCCTGAAAGAGGAGAAACCTCAAATTCTATTAATGTTAGGCAAAGGGCTTTAAGGAGATCTTACTCTCATATCATTGAAGAGGACATAATTGGTGTTGAGGATGATGTGAGGATTTTAGGGTCATGTTTGGTCAACCCAAAGGAAAGCTATAGAGTAGTTTCCATTTGTGGGATGGGGGGTATAGGGAAGACAACATTGGCAAAGAAGGTATATCATAGTGCTGAGGTTAGGCGCCACTTTGATGGTTTAGCTTGGGCTTACATATCACAACATTGCCAAGCAAGGGATGTGTGGGAAGGGATTTTGTTTAAGCTTATTACTCCTTCTAAAGAGCTCAGAGAGGAACTTGTTAATATGAGAGATGAGGAGATTGCAAGAATGCTCTACNATGTTCAAGTGGAGAAGAAGTGTTTGGTGGTTCTTGATGATATTTGGAGTGCTGGTACTTGGAACAATCTGAGTCCTGCATTCCCAACTGGGAGATCATTGTCAGAAGTTGGTAGCAAGATATTGCTGACTACTAGGAACACTGATGTTGCTTTGCATATGGATCCTACTTGTTATCTTCATAAACCAAGGTGTTTAAATGAAGATGATAGTTGGGAGTTGTTCCNGAAGAAGGCATTTCCAAAAAGTGATGATCCAGACTTCAGAATTAGCACAGAGATGGAGAAGTTGGGAAGGGAAATGGTTGGAAGGTGTGGAGGTTTACCACTAGCCATCATTGTCCTTGGAGGGCTATTAGCATCAAAACCAACATTCTATGAATGGGACACAGTTCGTCAGAACATCAATTCATACTTGAGAAGAGCATCAAAAGGCCATGAACAACTCTTGGGAGTATCTGAGGTGTTAGCTTTGAGCTATTACGAATTGCCATACCAATTGAAACCATGCTTCCTCCACTTAGCACATTTCCCAGAAAACATAGAGATACCAACAAAGAANCTAACAAGAATATGGGTGGCAGAAGGCATCATATCATCATTGGTACTTCAGAATGAAGGAGAGGAAGCACTCGAGGATGTGGCACAACGTTACTTGACCGAGCTAGTGGAAAGGTGCATGATTCAGGTAGTTGAGAAGAGTTCAACAGGAAGAATAAGAACTTGTCAAATGCATAACCTCATGAGGGACCTATGTGTATCTAAGGCAGATCAGGAGAACTTTCTTGAGACGATTGATTCTTGGAATGTTGATGAACCAAGGAGCTTATCAAGAGCAAGAAGGCCAAATGGTAAAGTTAGAAGGGTTGCCTTGTATCTTGAAAATCAAGATGTTGATAGGTTCCTTCTTCCTAAACACTTGAAAAGCCACCACCATTTAAGGTCTCTCCTTTGCTACCATGAAAAGACAGCTAGGCTAAGTGAATGGGGTTTGCTGAAGTCAGTTTTCAAGAAATGCAGGTTACTTAGAGTCCTAAACTTGGAAGGAATACAAGGTCAAATAGGGAAGTTACCAAAGGAAATTGGCTACTTGATCCATTTAAGGTTTCTCAGCCTAAGGAACACAAAGATTGATGAGTTACCAGAATCAATAGGGAACTTGAGGTGCTTGCAGACACTTGATCTTCTCACAGGAAATTCAACTGTACAAATACCAAATGTCATAGGGAAATTGGACAGGTTGAGGCATTTGTATCTACCAGAGTCTTGTGGCAATGGCACTGAAAAATGGCAACTTGGGAATCTGAAAAACTTGCAGACCTTGGTTAACTTCCCTGCAGAGAAGTGTGATGTAAGAGACCTTGTGAAACTGACCAAGTTAAGAAAACTGGTGATAGATGATCCTAAATATGGAGACATCTTCAAGTCTCCTGAGGTAACATTTAGCCACCTNGAGTCATTGTTTTTTGTTAGTTCTGAGGATATTTCAGTTCTCCAAGTTGCAGCAGGNTGCCCCAATCTCTACAAGTTGCACATAGAAGGGCCTATAGCGAATTTTCCACAACCCCATCAAATTTCTTCCAAGCTAGCAAAGCTAAAGTTGCAAAGTTCTGGACTTGTTATTGATCCAATGACAACATTGGAGAAGCTTCCCAATTTAAGGTTGCTTGAGCTACAACTTGATTCATTCTTGGGNGAGCAAATGGTTTGTTCTAGCAAAGGTTTCCCTCAGCTAAGGTCTCTTGTTGTTAGTGATTTGCCTAATCTNGAAGTGTGGAAGGTGGAGAAAGGAGCAATGCCTAGTCTTGGAAAACTTGAGATCTCAAATTGCACTAAGCTTGAGATGGTTCCTGATGGGATCAGGTTTGTTNCTACTCTTCAGGATTTGGAGATTAGATCAATGTTTGCAGCATTCAGAATTAAACTTGAAAAAGGAGGAGAGGATCATTACAAAGTCCAACNTGTGCCATATGTGGTATTTCGTTATTGTGACTATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03571	8879	12492	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003571s00044387.1	PF00931.17	NB-ARC	171	466	6.00E-76
Glyur003571s00044387.1	PF12799.2	LRR_4	634	666	9.90E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.082
SRR1783600	control	1.973
SRR1783602	moderate drought stress	0.981
SRR1811619	moderate drought stress	0.970

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.689
DRR006520	Root Summer glycyrrhizin high producing strain	0.690
DRR006521	Root Winter glycyrrhizin high producing strain	4.387
DRR006522	Root Winter glycyrrhizin high producing strain	4.383
DRR006523	Root Summer glycyrrhizin low producing strain	1.642
DRR006524	Root Summer glycyrrhizin low producing strain	1.567
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.626
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.659

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.556
SRR2868004	Drought Stress (root)	13.846
SRR2967015	Control (root)	14.562

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.209
SRR9715740	Leaf	6.532
SRR9715741	Leaf	25.947
SRR9715739	Root	0.731
SRR9715742	Root	4.582
SRR9715743	Root	4.164

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.483
SRR8749028	MeJA induced 9h	16.752
SRR8749029	MeJA induced 9h	7.751
SRR8749030	Uninduced	6.807
SRR8749031	Uninduced	4.400
SRR8749032	Uninduced	5.732

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.726
SRR8400027	Control - Root	7.937