Gene detail information of Glyur003553s00042434 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G27700.1 | 3.00E-73 | Rhodanese/Cell cycle control phosphatase superfamily protein |
| NR | XP_004502705.1 | 1.27E-155 | PREDICTED: rhodanese-like domain-containing protein 14, chloroplastic-like [Cicer arietinum] |
| COG | NP_615706.1 | 2.00E-07 | hypothetical protein MA0746 [Methanosarcina acetivorans C2A] |
| Swissprot | tr|Q94A65|STR14_ARATH | 1.00E-103 | Rhodanese-like domain-containing protein 14, chloroplastic (Precursor) |
| trEMBL | tr|G7J862|G7J862_MEDTR | 3.00E-144 | Uncharacterized protein {ECO:0000313|EMBL:AFK45948.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03553 | 9659 | 12958 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003553s00042434.1 | PF00581.15 | Rhodanese | 92 | 225 | 2.70E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.271 |
| SRR1783600 | control | 2.117 |
| SRR1783602 | moderate drought stress | 4.600 |
| SRR1811619 | moderate drought stress | 4.931 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.317 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.881 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 39.429 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 38.216 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.229 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.962 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 99.465 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 97.362 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.697 |
| SRR2868004 | Drought Stress (root) | 0.854 |
| SRR2967015 | Control (root) | 1.954 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.793 |
| SRR9715740 | Leaf | 14.882 |
| SRR9715741 | Leaf | 14.301 |
| SRR9715739 | Root | 0.234 |
| SRR9715742 | Root | 0.285 |
| SRR9715743 | Root | 0.205 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.425 |
| SRR8749028 | MeJA induced 9h | 4.850 |
| SRR8749029 | MeJA induced 9h | 5.563 |
| SRR8749030 | Uninduced | 3.166 |
| SRR8749031 | Uninduced | 3.657 |
| SRR8749032 | Uninduced | 6.904 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.068 |
| SRR8400027 | Control - Root | 0.995 |