Gene detail

Gene detail information of Glyur003553s00042433

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G49320.1	5.00E-69	Metal-dependent protein hydrolase
NR	XP_010515276.1	2.79E-112	PREDICTED: UPF0160 protein MYG1, mitochondrial-like [Camelina sativa]
COG	YP_268888.1	5.00E-30	hypothetical protein CPS_2163 [Colwellia psychrerythraea 34H]
trEMBL	tr\|I1JYM3\|I1JYM3_SOYBN	2.00E-105	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G41070.1}

Sequence

Transcript Sequence

>Glyur003553s00042433.1
ATGGTCAAAGTTGCGAGAGTGTGTTACACTTACAGGACGTTCNCGTTCCACAAGCCTCTATCGGCGTTGGGTCACGTCATTCTATCATCGTCTTTCTCCACGCACGGCGCTAAGCGCGTGGGAACTCACAGCGGAACCTTCCACTGCGACGAAGCNCTCGCGTGCTCCATGCTTCGCCTCTCCAAACACTTCTCAAATGCCGACATCGTTAGAACGAGGGACCCNAAGCTTCTAGAATCCCTAGATGCCGTGGTCGACGTGGGAGGCGCATATGACCCGCTACGACACCGTTACGACCACCATCAAAGGGATTTCGATCAAGTATTCGGTTATGGCTTCGCCACTAAGCTCAGCAGCGCTGGACTTGTCTATAAGGATTCTGACCAGTCCTCTGATGCAGAAAATGAGGCCTTTCATCGGGCAATGGCCCTGGCTGGTGGTGAATTTTTGGAGAATGTGAATTATTATGCAAAATCATGGTTACCGGCACGGTCGATTCTTATGGAGTGTCTTGCAGCAAGAGAAACTATTGATTCTAGTGGAGAAATCATAAAGCTAAATCGATCTTGTCCTTGGAAACATCACATACATGAGCTTGAGGAAGAAATGAAAATCAACCCTTCCATCAAATATGTTCTCTACCCGGATGATAGGAGTGAGAATTGGCGACTACAGGCAGTGGCAATTTCACCTGCTAGATTTGAGAGCAGAAAACCATTACCATATCTTTGGAGGGGTTTGGAAAATGACAAGTTATCCGAGGTTGCTGGAATCCCAGGTTGTACATTTGTGCACATGAGTAGATTTATTGGAGGAAATAGAAGTTATGATGGTGCTCTAGCCATGGCAAGAGCATCTTTAAAGGCTTAGACAATGGTAGGTTAAACAAATACCTTTTTCCCAAGCATTTAGTTTTTCTTCTTTTGGATTGAATGGAACCGGATATGCTTGATCACTGAACTTGTTTTTAATTGAAGCAGTATGCTTCTGTGGTTCAGAAACATGGTTTATGTGTATTGTTAAATTGCAAAATACTGATAAGATGATGCTGATATATAGACCCTTTCCAGTTAAAGCTAGGGATGCAATCTTTAGAGAATGTAACTCAACATTTTTGTTATCAATTTTTTCTGCACCAGTTCAATGATGACATTTCAATTCATCAGTTCTGTTCTTAATTTACATTTGTCACCATTCTCATTATGGTCAAAACTAGGTCCAGGCTGCACTGCATGCACGATGTTGGCACTAGATTCACTCCTCTGAAACACTTGGCAGACCCTCTTTAAACCATGCATAAAGACCACCTTCTAGATGGAAAACATTGGTAAAACCGTTAAGGACCAGCAAGTAAGCTGCTATTAGAGACCTGTGAAAGTATTAAAATGTGATCATTAGAGCAGCAGATCAATATTAGAAGATTTAAGATTGTTTTTTTCATAATCACATGAAAAGTGGTATGCAACATGCAGAGTACAGTTGTAAGAAGATGATATATGCATACATCCATGCAATCCAAGTTATTAATTGCACCTTGACTTGTGTGTTTTAGCCGATAATAATTGGAATTCGAGAGCTAATTGCTAATTGTGGATGGATTTGACTTCTTACTGACATCTATGTTGCTATTTCTTTACATAATTAGTAACTTGGTAGGATGGTTTAGAATAATATAGATGTCATATACCCTGTCCTCTAAAATTTTGGGGTGTGTTTGGGAGTTTTGGAGTGGAGGGGAGGGGAGGGTTTTGACATTTTAAGAGGAAAGTGAAGGGAAAGGAAGGGGAGGATAATCCCCTACCTTGCATGGATGCTCATTTTTAATAAAAAAATTAAAACCTCCAAAAACCTCTGATTTGGAGGAAATCTAAAAATGTATTAGGGAGAGGGTTTTGGAGGGTTTTAAAATGTTTTTACATCCTTTTTCCCTTTTTATAAAACTAAAATGTTGCTATAAACCCTCCCCTCCCCTCCAAAACTCCCAAACACACCCTTAATGTCTCTAAATGCGAGGTTGGATGCAAAGTGCAACCACATCCAAAAGCTTTGCATTGGAATCGCCAAAAAATTGCATACAAAATGGATACATTTCACAAACCATCGTCAACCAGTTTTGGACTATACATTCTTACACCATATATGAAATTATATGAGCAAAAGTGAAAAACCAGAGAGAGAAGAAAACAGGAGGGAGGAGGGAGGGAGGGGGGGAGAGAATTTGATACCTTGATTGTTGACCTTCTGGCAGATTTTGTGATGGTTTCATAGTTCCCCCTGCTGAGCAAGCTACTATTATCTTTGCATTTTTATCTAATTTTGCTTCAACAGCTGGCAACATGAATCAAATATTTAGTTTCAGAAAACAAGAAATGCATGATTATAAAAATGCATGATGTAGTAAATTTATTGTTGTACATTGTATAAACTCAGGGTTCTCTTCTGTGCCAGAAAAAATCCCAAAAAATGCAAATGCAGCACGTCTGGCAATGTCCCATGCTGTCCACTCTTTTATAAGCCTGTATATTTGCACATTAATAGCATCTGGGGGATGAGCCTGCACTAATAGCCACATCCATCAGTTTTAACAAATTAGAAGCACAAGAGAGACACAGAAAAATGCAACATGAATGTACAGGCACATTGGAGTTGGAAAATGAGGCTTCTAAAACTTGTTCACTAACCTCCTTGAACTCTGCTTCTGGCCTTACATCAAGAATCACAAAGTTATTTTCTTTCTGAAGGCGCAGAGCTTCCTTTACATCCACACTTTTTACCTGCAATATTATATCGTATACTTACTCTGCATGTGACATAAACGTGACATCAAATTTCCTAAGATTTTACACAAAACTTAAGTGTACATGTTTTTATCAGTTGTAGGTTGGTAACACTTGTTTGACTAGATAGTCTGGTTGCCCCTTCGTGTCATTATTCTTGTTTCCATCATTCTATGATCCTTGCTGTTTGTGTACTCATGATTTATATTATGATTCTAAATACAGAATGGAATTTCATATGCTTCTGCAGACATTTCAAGCTTTTGTTACCGGAATATTTTGCATTATCTTGAAATTTCTTTGTGCTCACTTTAACATTAAATACTACAGATGCAAGTGTGCTTATCTGTGCATTCAGGAGATATGCGTGACACAGAGAGGTGGAGACACTTACCCTTTTCTGCTGCAGATATTCTCGCTTAACCTTCCAATCTTCTTCAGCTAATACATCCAATANAAAAGTGAAAAAAGGAGAGATCTTTAAGATTCTATCACATCTTCAAAGTGCTACAACAATGCAATTAAGAGTTAACTCAGAACAGGTACCTGGTGACTTGGCTGGTTTTGTGGCTGCACTCTGGATTGNTATCCCTCTTGCAACATTCTGTGGGTGTAACCTTTGACCAGTGGGTTTGTATGATCTCACTCTCACACACCGTGAATTATGATCACGTGTACCTTCTAAAGAAGGTGCCAAGGATTGTAAATATGATGTGGATGAATATTGTAGAGCAGTTGATGTAAAAGCCGCCATGCCTTAAAGCTCTTAGTTTCCACAGAAAAGGAAGGAAAAAAAATCAGATANGGGATTACAAAATTTTCTAGTTAATGGTCTAATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03553	7295	12926	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003553s00042433.1	PF03690.8	UPF0160	38	126	3.40E-40
Glyur003553s00042433.1	PF03690.8	UPF0160	129	288	6.80E-54

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.377
SRR1783600	control	2.352
SRR1783602	moderate drought stress	4.444
SRR1811619	moderate drought stress	4.212

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.580
DRR006520	Root Summer glycyrrhizin high producing strain	1.635
DRR006521	Root Winter glycyrrhizin high producing strain	9.756
DRR006522	Root Winter glycyrrhizin high producing strain	9.081
DRR006523	Root Summer glycyrrhizin low producing strain	2.140
DRR006524	Root Summer glycyrrhizin low producing strain	2.253
DRR006525	Leaf Summer glycyrrhizin high producing strain	25.140
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.768

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.299
SRR2868004	Drought Stress (root)	2.402
SRR2967015	Control (root)	2.564

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.775
SRR9715740	Leaf	3.201
SRR9715741	Leaf	3.252
SRR9715739	Root	0.710
SRR9715742	Root	0.932
SRR9715743	Root	1.058

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.180
SRR8749028	MeJA induced 9h	4.543
SRR8749029	MeJA induced 9h	3.864
SRR8749030	Uninduced	1.837
SRR8749031	Uninduced	1.016
SRR8749032	Uninduced	0.918

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.970
SRR8400027	Control - Root	1.854