Gene detail information of Glyur003552s00044973 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G06560.1 | 8.00E-107 | Protein of unknown function, DUF593 |
| NR | XP_006604676.1 | 0 | PREDICTED: uncharacterized protein LOC100797605 [Glycine max] |
| trEMBL | tr|I1NAX5|I1NAX5_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G39020.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03552 | 14480 | 16919 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003552s00044973.1 | PF04576.10 | Zein-binding | 58 | 150 | 3.80E-34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.717 |
| SRR1783600 | control | 0.718 |
| SRR1783602 | moderate drought stress | 0.773 |
| SRR1811619 | moderate drought stress | 0.854 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.885 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.764 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.292 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.305 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.772 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.653 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.634 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.592 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.938 |
| SRR2868004 | Drought Stress (root) | 3.781 |
| SRR2967015 | Control (root) | 3.978 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.184 |
| SRR9715740 | Leaf | 1.760 |
| SRR9715741 | Leaf | 1.586 |
| SRR9715739 | Root | 0.668 |
| SRR9715742 | Root | 1.783 |
| SRR9715743 | Root | 1.147 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.335 |
| SRR8749028 | MeJA induced 9h | 0.980 |
| SRR8749029 | MeJA induced 9h | 0.860 |
| SRR8749030 | Uninduced | 0.653 |
| SRR8749031 | Uninduced | 1.487 |
| SRR8749032 | Uninduced | 0.979 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.736 |
| SRR8400027 | Control - Root | 4.001 |