Gene detail information of Glyur003547s00042041 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G08940.1 | 1.00E-138 | Ubiquitin carboxyl-terminal hydrolase family protein |
| NR | XP_004500634.1 | 0 | PREDICTED: uncharacterized protein LOC101492772 isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q689D6|RPD1_ARATH | 2.00E-27 | Protein ROOT PRIMORDIUM DEFECTIVE 1 |
| trEMBL | tr|V7ARR3|V7ARR3_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW08254.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03547 | 1720 | 2937 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003547s00042041.1 | PF11955.3 | PORR | 64 | 390 | 1.00E-106 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.838 |
| SRR1783600 | control | 8.983 |
| SRR1783602 | moderate drought stress | 12.871 |
| SRR1811619 | moderate drought stress | 12.710 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.445 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.677 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.248 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.403 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.761 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.166 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.897 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.142 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.442 |
| SRR2868004 | Drought Stress (root) | 2.283 |
| SRR2967015 | Control (root) | 2.273 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.473 |
| SRR9715740 | Leaf | 2.707 |
| SRR9715741 | Leaf | 3.300 |
| SRR9715739 | Root | 4.916 |
| SRR9715742 | Root | 6.018 |
| SRR9715743 | Root | 4.245 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.329 |
| SRR8749028 | MeJA induced 9h | 2.937 |
| SRR8749029 | MeJA induced 9h | 0.929 |
| SRR8749030 | Uninduced | 0.555 |
| SRR8749031 | Uninduced | 0.682 |
| SRR8749032 | Uninduced | 0.782 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.541 |
| SRR8400027 | Control - Root | 3.188 |