Gene detail information of Glyur003547s00042040 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G78230.1 | 5.00E-139 | Outer arm dynein light chain 1 protein |
| NR | KEH34949.1 | 0 | outer arm dynein light chain 1 [Medicago truncatula] |
| COG | YP_007148816.1 | 2.00E-11 | Leucine Rich Repeat (LRR)-containing protein [Cylindrospermum stagnale PCC 7417] |
| Swissprot | tr|F4IIU4|AIR9_ARATH | 7.00E-09 | 187-kDa microtubule-associated protein AIR9 |
| trEMBL | tr|A0A072UYU5|A0A072UYU5_MEDTR | 0 | Outer arm dynein light chain 1 {ECO:0000313|EMBL:KEH34949.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03547 | 1666 | 8191 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003547s00042040.1 | PF13855.1 | LRR_8 | 447 | 503 | 1.20E-08 |
| Glyur003547s00042040.1 | PF12799.2 | LRR_4 | 517 | 552 | 2.50E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.931 |
| SRR1783600 | control | 6.057 |
| SRR1783602 | moderate drought stress | 8.580 |
| SRR1811619 | moderate drought stress | 8.533 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 25.905 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.616 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.701 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.328 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 41.641 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 41.613 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.511 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.438 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.350 |
| SRR2868004 | Drought Stress (root) | 26.417 |
| SRR2967015 | Control (root) | 41.847 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 102.413 |
| SRR9715740 | Leaf | 76.418 |
| SRR9715741 | Leaf | 99.258 |
| SRR9715739 | Root | 10.214 |
| SRR9715742 | Root | 89.486 |
| SRR9715743 | Root | 73.713 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.053 |
| SRR8749028 | MeJA induced 9h | 40.777 |
| SRR8749029 | MeJA induced 9h | 22.847 |
| SRR8749030 | Uninduced | 48.963 |
| SRR8749031 | Uninduced | 24.019 |
| SRR8749032 | Uninduced | 21.849 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.075 |
| SRR8400027 | Control - Root | 18.583 |