Gene detail

Gene detail information of Glyur003537s00043853.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G35930.1	2.00E-127	plant U-box 23
NR	KEH41883.1	0	E3 ubiquitin-protein ligase PUB23-like protein [Medicago truncatula]
COG	YP_001957949.1	6.00E-09	hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q84TG3\|PUB23_ARATH	3.00E-163	E3 ubiquitin-protein ligase PUB23
trEMBL	tr\|A0A072VKF3\|A0A072VKF3_MEDTR	0	E3 ubiquitin-protein ligase PUB23-like protein {ECO:0000313\|EMBL:KEH41883.1}

Sequence

Transcript Sequence

>Glyur003537s00043853.1
ATGGATCATGAGATCGAGGTTCCTCCGTTCTTCGTGTGCCCCATTTCGCTAGAAATCATGAAGGACCCAGTTACAGTATCCACCGGCATCACCTATGAGCGAGACAGCATCGAGAAATGGCTCTTCGCCGCGAAAAATGACACCTGCCCAGTCACCAAACAACCCCTAACATCATCCATTAATGATGTCACCAATAATGTTATCCTCACCCCAAACCACACCCTCCGTAGACTCATCCAATCCTGGTGCACCCTTAACTCCTCCCACGGCATCGAAAGAATCCCAACACCGAAATCCCCCGTAACCAAATCCCTCATTNAGAAACTCCTCAAAGACTACACTTCAAATTCAAATTCCCCTCACTCACAGATTCAATGCCTCAAATCCCTCAAAACCATAGCCTCCGAAAGCGAATCCAACAAACGCTGCATCGAATCCTCCGGTGCCGTTGACTTCTTAGCCACAATCATAACCTCCAACACCGTTTCTTCCTTAACACTAGTAGATTNTGAAGAAGGGTTTGAATTCAAAACAGGTGCAGAAGATGAAGCCTTAAGCATTCTCCACAATCTCAGTTTATCAGAAAATGGTTTGAAGTCTCTATTGGGTTTCAAAAACGGTGAATTCGTTGACTCTTTAATAAGAGTAATGCAGAGGGGAAACTATGATTCAAGGACTTACGCTGTTCTGTTATTNAAATCCATTGCTGACGTGGCAAATCCTGTGCAACTAGTGAACATAGGAGGGGGTAATGGTTTAACTTTAAATTTAATCTTCGTTGAGCTTGTTCAGATTTTGAAAGACCAGGTTTCAAACAAGGCAACAAAGGCAACACTTCAAGCACTGAGTCAACTCGTTCCATTGGGAAGGAACAGAGTGAAAGCGGTGGAAGCAGGGGCGGTTCCTGTTCTTGTTGAGATTCTTCTAGATTGTAAAGAGAGGAAGCTATGTGAGATGGTTTTGGTGGTTTTGGAGATGCTGTGTCAGTGTGCTGATGGTCGTGCTGAGTTATTGGGACACGGTGCGGGTTTGGCTATTGTTTCCAAGAAGATTCTGAGGGTTTCAACTATGGCTAATGATAGAGCTGTTAGGATTCTTCTTTCTGTTTCGAGGTACTCTGCTACCAAGAGTGTGGTTCATGAGATGCTTCAGCTTGGTGTTGTGGCGAAGCTTTGTTTGGTGGTTCAGGTTGATAGTGGGAATAAGGCTAAGGAAAAAGCGAGGGAGATACTCAAACTTCATGCTCGGGATTGGAGGAATTCGAGTTGCTTACCCAGCAATTTGCTTGCCTCTTACCCAACAACAAGCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold03537	9105	10415	+

Gene family

Gene family	subfamily
Ubiquitin Family	U_box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016567 protein ubiquitination

molecular_function

GO:0004842 ubiquitin-protein transferase activity

GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003537s00043853.1	PF04564.10	U-box	7	86	5.40E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.166
SRR1783600	control	0.084
SRR1783602	moderate drought stress	0.029
SRR1811619	moderate drought stress	0.056

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.166
DRR006520	Root Summer glycyrrhizin high producing strain	0.215
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.292
DRR006524	Root Summer glycyrrhizin low producing strain	0.338
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.284
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.280

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.026
SRR2868004	Drought Stress (root)	33.624
SRR2967015	Control (root)	49.046

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.214
SRR9715740	Leaf	7.825
SRR9715741	Leaf	30.712
SRR9715739	Root	1.788
SRR9715742	Root	4.459
SRR9715743	Root	4.536

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.680
SRR8749028	MeJA induced 9h	82.132
SRR8749029	MeJA induced 9h	35.570
SRR8749030	Uninduced	402.621
SRR8749031	Uninduced	332.702
SRR8749032	Uninduced	116.996

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.662
SRR8400027	Control - Root	9.863