Gene detail information of Glyur003532s00040330 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G02530.2 | 8.00E-17 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| NR | XP_004505883.1 | 5.60E-35 | PREDICTED: THO complex subunit 4-like [Cicer arietinum] |
| Swissprot | tr|Q8L719|THO4B_ARATH | 2.00E-19 | THO complex subunit 4B |
| trEMBL | tr|I1LK48|I1LK48_SOYBN | 5.00E-33 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G15040.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03532 | 3341 | 8191 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003532s00040330.1 | PF13893.1 | RRM_5 | 13 | 44 | 9.20E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.996 |
| SRR1783600 | control | 20.123 |
| SRR1783602 | moderate drought stress | 31.987 |
| SRR1811619 | moderate drought stress | 12.086 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.166 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.860 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.711 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.572 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 30.302 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 30.127 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.041 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.868 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.465 |
| SRR2868004 | Drought Stress (root) | 0.266 |
| SRR2967015 | Control (root) | 0.071 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.367 |
| SRR9715740 | Leaf | 0.409 |
| SRR9715741 | Leaf | 0.241 |
| SRR9715739 | Root | 0.780 |
| SRR9715742 | Root | 0.159 |
| SRR9715743 | Root | 0.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.090 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.089 |
| SRR8749031 | Uninduced | 0.182 |
| SRR8749032 | Uninduced | 0.991 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.592 |
| SRR8400027 | Control - Root | 0.147 |