Gene detail information of Glyur003532s00040329 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G35710.1 | 2.00E-47 | Protein kinase family protein with leucine-rich repeat domain |
| NR | XP_007139651.1 | 2.26E-125 | hypothetical protein PHAVU_008G047800g [Phaseolus vulgaris] |
| COG | YP_001192956.1 | 7.00E-42 | two component regulator [Flavobacterium johnsoniae UW101] |
| Swissprot | tr|Q9LP24|Y1571_ARATH | 8.00E-59 | Probable leucine-rich repeat receptor-like protein kinase At1g35710 (Precursor) |
| trEMBL | tr|V7B287|V7B287_PHAVU | 8.00E-126 | Uncharacterized protein {ECO:0000313|EMBL:ESW11645.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03532 | 3 | 956 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003532s00040329.1 | PF08263.7 | LRRNT_2 | 31 | 72 | 1.40E-08 |
| Glyur003532s00040329.1 | PF00560.28 | LRR_1 | 149 | 172 | 0.06 |
| Glyur003532s00040329.1 | PF00560.28 | LRR_1 | 174 | 196 | 0.056 |
| Glyur003532s00040329.1 | PF13855.1 | LRR_8 | 222 | 282 | 5.40E-07 |
| Glyur003532s00040329.1 | PF00560.28 | LRR_1 | 295 | 317 | 0.022 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.092 |
| SRR1783600 | control | 1.036 |
| SRR1783602 | moderate drought stress | 1.368 |
| SRR1811619 | moderate drought stress | 1.408 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.709 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.564 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.751 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.985 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.585 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.533 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.291 |
| SRR2868004 | Drought Stress (root) | 4.178 |
| SRR2967015 | Control (root) | 2.691 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.003 |
| SRR9715740 | Leaf | 2.110 |
| SRR9715741 | Leaf | 4.289 |
| SRR9715739 | Root | 0.423 |
| SRR9715742 | Root | 6.428 |
| SRR9715743 | Root | 4.998 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.167 |
| SRR8749028 | MeJA induced 9h | 0.386 |
| SRR8749029 | MeJA induced 9h | 0.064 |
| SRR8749030 | Uninduced | 0.350 |
| SRR8749031 | Uninduced | 1.080 |
| SRR8749032 | Uninduced | 0.712 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.684 |
| SRR8400027 | Control - Root | 2.157 |